PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Cis-element |

Publication

Basic Information? help Back to Top

TF ID

SapurV1A.1723s0080.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 275aa MW: 31413.8 Da PI: 7.1157

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1723s0080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	248.6	2.5e-76	3	269	163	374
GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................... 214 rL++ Ae+l++pf+fn+ ++++le+l+le+Lrvk+gEala+++vlql++ll SapurV1A.1723s0080.1.p 3 IRLTEEAEKLDIPFQFNP-IVSKLENLDLENLRVKTGEALAISSVLQLQTLLamddemhrrnspsgsknpnsnhfqrvqinqnrrtl 88 69**************.7999************************************************************ PP GRAS 215 .........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 + s + ++L++++slsPk++v++eqe++hn+ +++er++eal++y+alfd+le++++ SapurV1A.1723s0080.1.p 89 gdwlerdvvnayssspdsalsplslAASP----KMGSFLNALRSLSPKLMVITEQESNHNGFTLMERVTEALNFYAALFDCLESTVS 171 ************9997754444444....4566********************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 r s er+kvE++l+g+ei+n++aceg++r+erhe+lekW rle aGF+ +pls++ qa++ l+ ++ dgy+++ee+g+lv++W+ SapurV1A.1723s0080.1.p 172 RVSLERHKVEKMLFGEEIKNIIACEGTDRKERHEKLEKWILRLELAGFGIIPLSYHGRLQANRFLQSYGYDGYKIKEENGCLVICWQ 258 *********************************************************************************** PP GRAS 364 drpLvsvSaWr 374 drpL+svSaW+ SapurV1A.1723s0080.1.p 259 DRPLFSVSAWK 269 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.444	1	249	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-74	3	269	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAIRLTEEAE KLDIPFQFNP IVSKLENLDL ENLRVKTGEA LAISSVLQLQ TLLAMDDEMH 60 RRNSPSGSKN PNSNHFQRVQ INQNRRTLGD WLERDVVNAY SSSPDSALSP LSLAASPKMG 120 SFLNALRSLS PKLMVITEQE SNHNGFTLME RVTEALNFYA ALFDCLESTV SRVSLERHKV 180 EKMLFGEEIK NIIACEGTDR KERHEKLEKW ILRLELAGFG IIPLSYHGRL QANRFLQSYG 240 YDGYKIKEEN GCLVICWQDR PLFSVSAWKF RRYD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-26	4	271	177	380	Protein SCARECROW
5b3h_D	4e-26	4	271	177	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1723s0080.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184073	0.0	AC184073.2 Populus trichocarpa clone Pop1-50D1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002299218.1	0.0	scarecrow-like protein 3
Swissprot	Q9LPR8	1e-107	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A2K2BR77	0.0	A0A2K2BR77_POPTR; Uncharacterized protein
TrEMBL	B9GM40	0.0	B9GM40_POPTR; Uncharacterized protein
STRING	POPTR_0001s06090.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-103	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	SapurV1A.1723s0080.1.p

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]