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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1719s0020.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Trihelix | ||||||||
Protein Properties | Length: 386aa MW: 44078.2 Da PI: 6.3875 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 86.5 | 3.3e-27 | 75 | 156 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ SapurV1A.1719s0020.2.p 75 WVQDETRSLIGLRREMDGLFNTSKSNKHLWEKISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 156 ********************************************************************84...556899***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-4 | 66 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.478 | 67 | 131 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0011 | 71 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.86E-29 | 73 | 138 | No hit | No description |
Pfam | PF13837 | 3.2E-21 | 74 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MYASEKPRPL DFYKEEVTPS SSDNMIIEVV SSNGDLPPHH LPTTNTTNPH QMILGDSSGD 60 DNHEIKAPKK RAETWVQDET RSLIGLRREM DGLFNTSKSN KHLWEKISAK MREKGFDRSP 120 TMCTDKWRNL LKEFKKAKHQ DRGSGSAKMS YYKEIDEILR ERNKNPQYKS PTLSSKVDSY 180 MQFTDKGFED TSISFGPVDA SPRPTLNLER RLDHDGHPLA ITAADAVAAG GVPPWNWREA 240 PGNGAESQSY GGRVISVKYG DYTRRIGVDG TADAIKEAIK SAFRLRSKRA FWLEDEDQII 300 RSLDRDMPLG NYTLHLDEGL AIKVCLYDEP DHMPVHTEEK IFYTEDDYRD FLSRRGWTCL 360 REFDGYRNID SMDDLRHDAI YRGVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-50 | 69 | 154 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1719s0020.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015851.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like | ||||
Refseq | XP_011042307.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | B9HTC3 | 0.0 | B9HTC3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s17980.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1719s0020.2.p |
Publications ? help Back to Top | |||
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