PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1671s0050.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 202aa MW: 23493 Da PI: 8.1986

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1671s0050.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.8	1.4e-46	18	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 lp GfrF Pt+eel+++yL++k+eg++ e + i+++ iy++ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgy SapurV1A.1671s0050.2.p 18 LPLGFRFYPTEEELISFYLHNKLEGERQERMQLvIPDISIYDIEPWDLPKlsgqLCQGDTEQWFFFAPRQEREARGGRPNRTTASGY 104 699*********************97665655***********656754455777********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+ +v+s++++++glkkt+vfy+g+ap+g+kt+W m+eyr+ SapurV1A.1671s0050.2.p 105 WKATGSPGHVYSSDNRVIGLKKTMVFYTGKAPSGRKTKWKMNEYRA 150 ******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-48	14	152	IPR003441	NAC domain
PROSITE profile	PS51005	45.973	18	172	IPR003441	NAC domain
Pfam	PF02365	2.4E-24	19	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MLIQLRLSSE LDKKMEELPL GFRFYPTEEE LISFYLHNKL EGERQERMQL VIPDISIYDI 60 EPWDLPKLSG QLCQGDTEQW FFFAPRQERE ARGGRPNRTT ASGYWKATGS PGHVYSSDNR 120 VIGLKKTMVF YTGKAPSGRK TKWKMNEYRA IEVHELSNNA TPQVCMHMIF IFFLIKETNL 180 SIYRFPSLTI IWIQFLNAAE A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-34	18	152	20	147	NAC domain-containing protein 19
3swm_B	6e-34	18	152	20	147	NAC domain-containing protein 19
3swm_C	6e-34	18	152	20	147	NAC domain-containing protein 19
3swm_D	6e-34	18	152	20	147	NAC domain-containing protein 19
3swp_A	6e-34	18	152	20	147	NAC domain-containing protein 19
3swp_B	6e-34	18	152	20	147	NAC domain-containing protein 19
3swp_C	6e-34	18	152	20	147	NAC domain-containing protein 19
3swp_D	6e-34	18	152	20	147	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1671s0050.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006062.1	1e-103	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	7e-70	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2K2C1M7	1e-101	A0A2K2C1M7_POPTR; Uncharacterized protein
STRING	POPTR_0001s22630.1	8e-99	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-72	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	SapurV1A.1671s0050.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]