PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1647s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 28140.5 Da PI: 6.0725 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.4e-12 | 194 | 239 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveY+k Lq SapurV1A.1647s0020.1.p 194 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKVLQ 239 689*********************7....688***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.532 | 188 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-16 | 191 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.16E-12 | 192 | 243 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.0E-16 | 193 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-12 | 194 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-9 | 194 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MQPTPAGSSN ASAGGGSAGG GGGIARYRSA PATWLEALLE EEEDPLKQSQ NLTQLLTSNT 60 PPSRDSVPFN ASRASVEPGL FEPVCSFQRQ NSSPADFLGN SGIGSDQGYF SSYGVASNYE 120 CTTANMEVSP SDKRARAVEF QNPSATYPPP PLKGEQTGPL RASSLIEMEM DKLLEDSVPC 180 RVRAKRGCAT HPRSIAERVR RTRISDRIRK LQELVPNMDK QTNTADMLDE AVEYVKVLQR 240 QIQELTEQQR KCKCIAKE* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1647s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325537.3 | 1e-156 | transcription factor bHLH81 | ||||
Swissprot | Q9C8P8 | 4e-81 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A2K1WRC8 | 1e-155 | A0A2K1WRC8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s10900.1 | 1e-128 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9132 | 30 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 3e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1647s0020.1.p |