PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1601s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 245aa    MW: 28716 Da    PI: 8.0878
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1601s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-18449147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            rg W + Ede+l+++v+++G+++W++Ia++++ gR++k+c++rw++ 
  SapurV1A.1601s0030.1.p  4 RGHWRPAEDEKLKELVEKYGPHNWNAIAERLQ-GRSGKSCRLRWFNQ 49
                            899*****************************.***********996 PP
2Myb_DNA-binding50.25.8e-165699146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                            r ++T+eE+e+l+  ++  G++ W+ Iar ++ gRt++ +k++w+ 
  SapurV1A.1601s0030.1.p 56 RSPFTEEEEERLIASHRIQGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                            789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.569154IPR017930Myb domain
SMARTSM007174.5E-16352IPR001005SANT/Myb domain
SuperFamilySSF466891.54E-29497IPR009057Homeodomain-like
PfamPF002492.8E-18449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-27557IPR009057Homeodomain-like
CDDcd001671.02E-13748No hitNo description
SMARTSM007177.3E-1455103IPR001005SANT/Myb domain
PROSITE profilePS5129419.52155105IPR017930Myb domain
PfamPF002498.9E-135698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2058104IPR009057Homeodomain-like
CDDcd001672.11E-95898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MCSRGHWRPA EDEKLKELVE KYGPHNWNAI AERLQGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEERLIAS HRIQGNRWAI IARLFPGRTD NAVKNHWHVI MARRCRERSR LHEKRAAQTL  120
VNHQKISSKQ EMHNIDCETR NFSSFSKKYC EKYGQYPLVT DHSHLQALCK EFYNEDPSHC  180
KDQSRQIEFY DFLQVNTDSN KSEVIDNAKR DEEEVDQQGA MENDQSKAGV PFIDFFSVNG  240
KSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3341057108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1601s0030.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8074720.0FJ807472.1 Populus trichocarpa MYB transcription factor (MYB167) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318324.11e-162transcription factor MYB54
SwissprotQ6R0C48e-87MYB52_ARATH; Transcription factor MYB52
TrEMBLB9I4W41e-161B9I4W4_POPTR; MYB family protein
STRINGPOPTR_0012s03650.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-89myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]