PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1584s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 681aa MW: 76927.6 Da PI: 5.0808 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.7 | 1.5e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelv +yLkkk++++k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWka SapurV1A.1584s0060.1.p 6 LPPGFRFHPTDEELVAYYLKKKINAHKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKA 91 79****************************.99***************6434555777***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd++v+s + ++vg+kktLv+y+grap+g +t Wvmheyrl SapurV1A.1584s0060.1.p 92 TGKDRKVIS-QMRAVGMKKTLVYYRGRAPHGARTGWVMHEYRL 133 *********.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-62 | 4 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.629 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKKKINA HKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVIS QMRAVGMKKT LVYYRGRAPH 120 GARTGWVMHE YRLDERECET NTGLQDSYAL CRVSKRTTTI PKIGEIYEST TSRVPCEHSS 180 SINEIYSENN GRCEEYESTN YTLHRNVDTC STSYRATGSP LNIGESRNGK WIQSMDGFGT 240 SAPQFPNYST VPYPPSKVDI ALECARLQHR FTLPPLQVDD FPQFGFTDMK VMQQPSMQEC 300 TSTHQTDILQ EILSVAQASQ ELINQSSFQD TWGGNYATAD HDFTFMDGKD VQLNVYSDMM 360 MNSTRWVDKP WFEPSTSSRS IDMSDLDETF KAERMVENLR WVGMSNDELE KSFTEDTKIV 420 PIENISNFRS REEHGVLGEN GQTAGDCMGF NDSEDFSLAF INDEPSDDNF IEESNVDDLA 480 SSPSFEVVEE IKVNHGLFVS TRQATETFFH QLVPSQTVKI YLNPAVVTTN FCIDTAENTQ 540 KYDTKPSTTT AKENFIGSKS SVQNPWRYLA SNIVCMIVIL LMHCFYLGEN VENGNLMDEF 600 MGSGSVEEEG FCPSKNMIKP MKKPSGKLMK RDGNEKEKDL VVTIRGGGGS KLGLFLKKLG 660 LFLTISFALC SILVNHAMAS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-53 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-53 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-53 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-53 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-53 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-53 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-53 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-53 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-53 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-53 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-53 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-53 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-53 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-53 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1584s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305903.1 | 0.0 | NAC domain-containing protein 86 | ||||
Refseq | XP_024454966.1 | 0.0 | NAC domain-containing protein 86 | ||||
TrEMBL | A0A3N7EWK8 | 0.0 | A0A3N7EWK8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s07910.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4421 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-154 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1584s0060.1.p |