PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1571s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 356aa MW: 39952.9 Da PI: 10.2735 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100 | 1.4e-31 | 287 | 344 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYeg+Hnh+ SapurV1A.1571s0090.1.p 287 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGDHNHS 344 9*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.7E-19 | 238 | 283 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 5.3E-34 | 273 | 344 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.712 | 280 | 346 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-27 | 283 | 344 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.8E-38 | 285 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-27 | 287 | 343 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEEVEEAHKA AIESCNRVIG LLCQPKDQVQ GRNLMVETGE TVFKFKRVIS LLSTGLGHGR 60 VRKLKKFRSS LPQNIFLDSP HCKTILAPKP LQMVPPNFLE TPFNDMDAKS KPPVQIAQKM 120 FLENPVLELN SNIRPPLQIA QTKPPPNFQF LQQHQQIQRV LFQQQQQQMK YHVDRVYSRS 180 NSGINLKFDG STCAPTKSST RSFISSLSMD GTVSNLDGDS FHLIGMPHSS DHISQQSRKR 240 CSGKGEDGNA KCASGGKCHC SKRRKLRVKR SIKVPAISNK VADIPPDEYS WRKYGQKPIK 300 GSPHPRGYYK CSSLRGCPAR KHVERCLEDP SMLIVTYEGD HNHSRLIISS QSAHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-20 | 278 | 343 | 7 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1571s0090.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377445 | 0.0 | GQ377445.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006382812.1 | 0.0 | probable WRKY transcription factor 39 | ||||
Swissprot | Q9SR07 | 1e-127 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | B9MZB9 | 0.0 | B9MZB9_POPTR; WRKY family protein | ||||
STRING | POPTR_0005s05700.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 1e-126 | WRKY DNA-binding protein 39 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1571s0090.1.p |
Publications ? help Back to Top | |||
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