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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1486s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 148aa MW: 16478.1 Da PI: 8.0786 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.1 | 0.00018 | 37 | 142 | 6 | 52 |
HHHHHHHHHHHHHHHHHHHCTSCCC.............................................................. CS HLH 6 nerErrRRdriNsafeeLrellPkas...........................................................ka 33 +rE +RR+ a++++ e P+++ +a SapurV1A.1486s0090.1.p 37 TIRESKRRKSCPAALDKIAEFTPSNFsftfdtrfstssqeftpkfgsfnlvsstrerpddhtalcfhqssenkdgghrddkqqvgGA 123 68**********************888*********************************************************888 PP TTS-STCHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIk 52 ++l +++L++Av+ I+ SapurV1A.1486s0090.1.p 124 CEERLVNISTLRRAVDGIR 142 8888************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MAENSIEKPS KIQDSSRDPP SLATSSSSSS QEEKQETIRE SKRRKSCPAA LDKIAEFTPS 60 NFSFTFDTRF STSSQEFTPK FGSFNLVSST RERPDDHTAL CFHQSSENKD GGHRDDKQQV 120 GGACEERLVN ISTLRRAVDG IREKKKQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1486s0090.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023903650.1 | 5e-21 | vacuolar protein sorting-associated protein VTA1 homolog | ||||
TrEMBL | B9IHJ7 | 5e-65 | B9IHJ7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s02860.1 | 6e-66 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16020 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1486s0090.1.p |