PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SapurV1A.1486s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 193aa MW: 21976 Da PI: 10.3563

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1486s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ F+++ L H++ H SapurV1A.1486s0020.1.p 39 FRCKYCKNKFTTSQALGGHQNAH 61 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.25E-6	36	67	No hit	No description
PROSITE profile	PS50157	11.177	39	66	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.5E-6	39	63	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	41	61	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSSMEQNSAA ENMNSKRSKL DLNLMDFFEG NSSGERRMFR CKYCKNKFTT SQALGGHQNA 60 HKRERAMEKR DKLLGEHVMT YVPYPLWDMA MMRSPPVHYS YLGKNLGFDM RSMIHKPYNH 120 WFRGGFGQGG HYGGASTPHI MNHQPRFSGH MRGLQSMHSS IFTNGNPIGG SSISKNQKEE 180 EGRPRLELSL KL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1486s0020.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041411.1	2e-84	PREDICTED: zinc finger protein 3-like
TrEMBL	B9IHJ1	3e-97	B9IHJ1_POPTR; Uncharacterized protein
STRING	POPTR_0016s02800.1	5e-98	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17475	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	6e-19	C2H2 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1486s0020.1.p