PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1447s0080.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 850aa MW: 97682.1 Da PI: 6.0653 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 58.2 | 2.6e-18 | 62 | 137 | 3 | 78 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 Yn+YAk+vGFsvrk+ ++sk +g +++r+f+Cskeg+r+ +k++ + +++r+etrtgC a++ v+++ ++ +v SapurV1A.1447s0080.2.p 62 YNKYAKTVGFSVRKDWVNRSKVHGLVVSRKFTCSKEGYRRIDKRD-LNMKKHRKETRTGCLAHMIVTRQPyGKEIHV 137 9*****************************************999.99999****************9985555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-15 | 62 | 133 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-27 | 243 | 337 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.644 | 523 | 559 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 850 aa Download sequence Send to blast |
MVIGLQMSDN LDLSLDEDCS SLSFALVNSS QFSNSSKDGV HRGGVLKIGT EFESDEHAYI 60 SYNKYAKTVG FSVRKDWVNR SKVHGLVVSR KFTCSKEGYR RIDKRDLNMK KHRKETRTGC 120 LAHMIVTRQP YGKEIHVDQA AEGELPSKSG TESSSTFELK NRQFEGWQSL DYLAMDFDNS 180 LQSERIRDMK EGEAGRLLRY FQRQHIENPS FIHSIQVDID DKVRNLFWAD DKMVVDYDHF 240 GDVVCLDTSY RMNKDLQPFV QFIGVNHHNQ AVIFAAALLF DDTVESLKWL FNTFLEAMSG 300 KKPKVILTDQ DAAIVEAINS ILPETSHRIC VWQMYQNALK HLSLVVKDIE SFSNDFRSCI 360 YDYNNEEAFV HVWECLLDKY GLQQNDRLRW MFREREKWSI AYDRNTFFLD MKGSHVAEDL 420 SNNLRSYLNS DQDALQIYKI FERVVDEQRL KEIHANDEMT RCMPRILGNV VLLKHASGIY 480 TPKAFELFQK EYEKCLNVLV TQCNGKGVLL EYKVSTFGQA QEYTVTFNSA DDTVVCNCMK 540 FENVGFLCGH ALKVLDNWNI KVVPSRYILK RWTKDTRLGR VRNSSEFTAK ENSKLVVASR 600 YENLCRNILK ISARAAESED AFQFALRRLD ELIEGVEKIL MLKDEEGQGI NSSSTVLNGF 660 ESENAEYFFD EKELEDLGED NGVDGTKEKE NAAPERHQLK NINGKSCKKK RFQLGQTPSP 720 NTSSCISSPP QACVMTEGPT HNPLLQGLYN FEANQVVQCM YQQQNPIMDH EDYPNMYQQS 780 IFFADQHVSP TQTPLLHEPL IRSAYHESLT NNALLRQAMD LDLQRPHSSS ISLYDHGFRT 840 SDTSYLGLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1447s0080.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377078.2 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A3N7FUN9 | 0.0 | A0A3N7FUN9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s13550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-101 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1447s0080.2.p |