PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1440s0010.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 728aa MW: 79965.4 Da PI: 5.528 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.4e-20 | 60 | 115 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k SapurV1A.1440s0010.8.p 60 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 115 688999***********************************************999 PP | |||||||
2 | START | 217.6 | 4.2e-68 | 249 | 469 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 ela +a++elv++a+ +ep+W++s + +n+de++++f+++ + ++ ea+r+s+vv+m++ +lve l+d++ qW++ + SapurV1A.1440s0010.8.p 249 ELAVAAMEELVRMAQMDEPLWMSSLdgtnSVLNEDEYVRIFPRGIGpkptgFKCEASRESAVVIMNHINLVEYLMDVN-QWSTLFSg 334 57899**********************9999************999********************************.******** PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154 +a tlev+s+g galq+m+ae q+++pl+p R+++fvRy++q+ +g+w++vdvS+d+ ++ p +R++++pSg+li SapurV1A.1440s0010.8.p 335 ivsRALTLEVLSTGvagnynGALQVMTAECQLPTPLAPtRESYFVRYCKQHADGTWAVVDVSLDNLRPSPA----ARCRRRPSGCLI 417 ********************************************************************995....************ PP EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++ ng+skvtwvehv+ ++r +h+l+++lv+sg+a+gak+w+atl+rqce+ SapurV1A.1440s0010.8.p 418 QEMLNGYSKVTWVEHVEADDRGVHNLYKQLVSSGHAFGAKRWLATLDRQCER 469 **************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 39 | 115 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.61E-20 | 46 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-19 | 58 | 121 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.7E-18 | 60 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.47E-19 | 60 | 118 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.814 | 240 | 472 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.3E-34 | 240 | 471 | No hit | No description |
CDD | cd08875 | 4.65E-129 | 244 | 468 | No hit | No description |
SMART | SM00234 | 2.2E-65 | 249 | 469 | IPR002913 | START domain |
Pfam | PF01852 | 2.3E-57 | 250 | 469 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.0E-4 | 345 | 434 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.55E-24 | 488 | 719 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MFQPNMMEGQ LHRLDMAQNT HEGDMARIRD DEFDSTNTKS GGSENQDGAS GDDQDPRPKK 60 KRYHRHTQHQ IQEMESFFKE CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKTQHER 120 HENTQLRNEN DKLRADNMRY REALSNASCP NCGGPTAIGE MSFDEHHLRL ENARLREEID 180 RISAIAAKYV GKPVVNYPLI SAPMPPRPLD LGVGNFGGQP GIEGEIYGDG DLLRSINAPT 240 EADKPMIIEL AVAAMEELVR MAQMDEPLWM SSLDGTNSVL NEDEYVRIFP RGIGPKPTGF 300 KCEASRESAV VIMNHINLVE YLMDVNQWST LFSGIVSRAL TLEVLSTGVA GNYNGALQVM 360 TAECQLPTPL APTRESYFVR YCKQHADGTW AVVDVSLDNL RPSPAARCRR RPSGCLIQEM 420 LNGYSKVTWV EHVEADDRGV HNLYKQLVSS GHAFGAKRWL ATLDRQCERL ASAMATNIPA 480 GDVGVITNQE GRKSMMKLAE RMVISFCAGV SASTAHTWTT LSGTGADDVR VMTRKSVDDP 540 GRPPGIVLSA ATSFWLPVPP KRVFDFLRDE NTRNEWDILS NGGVVQEMAH IANGRDTGNC 600 VSLLRVNSAN SSQSNMLILQ ESCTDQTASF VIYAPVDIVA MNVVLNGGDP DYVALLPSGF 660 AVLPDGTAAH GGGMEESAGG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVERIKA 720 SLSCESA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1440s0010.8.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011005112.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A2K1XW69 | 0.0 | A0A2K1XW69_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s15010.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1440s0010.8.p |