PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1440s0010.6.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 760aa    MW: 83076 Da    PI: 5.6237
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1440s0010.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-2092147156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  SapurV1A.1440s0010.6.p  92 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 147
                             688999***********************************************999 PP
2START217.54.6e-682815011206
                             HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                   START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                             ela +a++elv++a+ +ep+W++s     + +n+de++++f+++ +     ++ ea+r+s+vv+m++ +lve l+d++ qW++ +  
  SapurV1A.1440s0010.6.p 281 ELAVAAMEELVRMAQMDEPLWMSSLdgtnSVLNEDEYVRIFPRGIGpkptgFKCEASRESAVVIMNHINLVEYLMDVN-QWSTLFSg 366
                             57899**********************9999************999********************************.******** PP

                             ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS
                   START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154
                                +a tlev+s+g      galq+m+ae q+++pl+p R+++fvRy++q+ +g+w++vdvS+d+ ++ p     +R++++pSg+li
  SapurV1A.1440s0010.6.p 367 ivsRALTLEVLSTGvagnynGALQVMTAECQLPTPLAPtRESYFVRYCKQHADGTWAVVDVSLDNLRPSPA----ARCRRRPSGCLI 449
                             ********************************************************************995....************ PP

                             EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             +++ ng+skvtwvehv+ ++r +h+l+++lv+sg+a+gak+w+atl+rqce+
  SapurV1A.1440s0010.6.p 450 QEMLNGYSKVTWVEHVEADDRGVHNLYKQLVSSGHAFGAKRWLATLDRQCER 501
                             **************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-2271147IPR009057Homeodomain-like
SuperFamilySSF466891.04E-1978149IPR009057Homeodomain-like
PROSITE profilePS5007116.98989149IPR001356Homeobox domain
SMARTSM003891.0E-1990153IPR001356Homeobox domain
CDDcd000863.78E-1992150No hitNo description
PfamPF000466.0E-1892147IPR001356Homeobox domain
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
SuperFamilySSF559617.85E-34272503No hitNo description
PROSITE profilePS5084843.814272504IPR002913START domain
CDDcd088752.20E-128276500No hitNo description
SMARTSM002342.2E-65281501IPR002913START domain
PfamPF018522.5E-57282501IPR002913START domain
Gene3DG3DSA:3.30.530.205.4E-4377466IPR023393START-like domain
SuperFamilySSF559619.77E-24520751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MTAGMMIPAR NMPSMIGIHG NVAGFGSSSE LALGQPNMME GQLHRLDMAQ NTHEGDMARI  60
RDDEFDSTNT KSGGSENQDG ASGDDQDPRP KKKRYHRHTQ HQIQEMESFF KECPHPDDKQ  120
RKELSRELGL EPLQVKFWFQ NKRTQMKTQH ERHENTQLRN ENDKLRADNM RYREALSNAS  180
CPNCGGPTAI GEMSFDEHHL RLENARLREE IDRISAIAAK YVGKPVVNYP LISAPMPPRP  240
LDLGVGNFGG QPGIEGEIYG DGDLLRSINA PTEADKPMII ELAVAAMEEL VRMAQMDEPL  300
WMSSLDGTNS VLNEDEYVRI FPRGIGPKPT GFKCEASRES AVVIMNHINL VEYLMDVNQW  360
STLFSGIVSR ALTLEVLSTG VAGNYNGALQ VMTAECQLPT PLAPTRESYF VRYCKQHADG  420
TWAVVDVSLD NLRPSPAARC RRRPSGCLIQ EMLNGYSKVT WVEHVEADDR GVHNLYKQLV  480
SSGHAFGAKR WLATLDRQCE RLASAMATNI PAGDVGVITN QEGRKSMMKL AERMVISFCA  540
GVSASTAHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL SAATSFWLPV PPKRVFDFLR  600
DENTRNEWDI LSNGGVVQEM AHIANGRDTG NCVSLLRVNS ANSSQSNMLI LQESCTDQTA  660
SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAVLPDGTA AHGGGMEESA GGSLLTVAFQ  720
ILVDSVPTAK LSLGSVATVN NLIACTVERI KASLSCESA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1440s0010.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005113.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLB9IAE60.0B9IAE6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s15010.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2