PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1387s0090.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 404aa    MW: 44528.3 Da    PI: 6.4206
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1387s0090.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-142972146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                            rg+++++E+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  SapurV1A.1387s0090.2.p 29 RGAFSQQEENLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 72
                            89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.414123IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-5722IPR009057Homeodomain-like
SuperFamilySSF466892.18E-20983IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-242378IPR009057Homeodomain-like
PROSITE profilePS5129424.6692478IPR017930Myb domain
SMARTSM007174.9E-122876IPR001005SANT/Myb domain
PfamPF002495.5E-132972IPR001005SANT/Myb domain
CDDcd001674.41E-93171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVSISADLQR CGKSCRLRWI NYLRPDLKRG AFSQQEENLI VELHAVLGNR WSQIAAQLPG  60
RTDNEIKNLW NSCIKKKLRQ RGIDPNTHKP LSEVENCTEK QRPTADTSNE KVSIVSNELN  120
LIEAAATLKP PAISSSSKIN TSIDSSKDRN SSGSNMTNTP PTQEFFLDRF ATSHESSPAS  180
CRPSDLMGYF PFQKLDYKRA IGLSMNPNTT LCFNPNSSSS EMISHEFNSS MTPTSIHPSV  240
STPMFQTPIR VKPSVSLPSD HNPSVASCDV NGVQNWEASS FSNGSSSSIE LQSNTNFYES  300
SAFSWGLADC GKSGEEAHLR SLGNDTADDI KWSEYLNTTF FLGSTTQNQT SQHVYSEVKP  360
ESYFIAEGSS ASWIPNQHQQ ASQPADIYTK DLQRLAVAFG QSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22107840108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1387s0090.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8017491e-134JQ801749.1 Populus tomentosa putative transcription factor (MYB216) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039057.10.0PREDICTED: transcription factor MYB86-like
TrEMBLB9N4050.0B9N405_POPTR; MYB family protein
STRINGPOPTR_0005s00340.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.16e-96myb domain protein 61