PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1378s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Trihelix

Protein Properties

Length: 298aa MW: 34611 Da PI: 8.6273

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1378s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.5	6.5e-22	43	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +e+++ i +r e++e++ +k++ +lWe vs++m e+g++r+p+qCk+kw+nl++ yk ++ + + + ++c +f++l+ SapurV1A.1378s0050.1.p 43 QWGLRETKEFIGIRAELKEDFTVTKRNRTLWEMVSARMGEKGYRRTPEQCKCKWKNLANLYKGKETPDPE----TGRQCLFFEELH 124 7***********************************************************99988886....4678999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.76	36	100	IPR017877	Myb-like domain
CDD	cd12203	7.45E-21	42	107	No hit	No description
Pfam	PF13837	2.1E-18	42	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MRFRSGGGEG GAGLGPINMM PTEAMLSPKA EISPRGPPLL QPQWGLRETK EFIGIRAELK 60 EDFTVTKRNR TLWEMVSARM GEKGYRRTPE QCKCKWKNLA NLYKGKETPD PETGRQCLFF 120 EELHEVFTDR DKNRQRVLLE SEAGSTRSRK KARRIDGDRS SDEFSDEDEV ESEEEKPAGS 180 NSRKRKGGKT VAEKTPRASG SAADGCAQEM LKDFFQQQLV MEMQWRELME KRAHERQMAE 240 QEWRRSMDKL ERERLTIEQA WREREEQRRI RGESRAERRD ALLTTLLNKL IDENDHM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1378s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304391.3	1e-134	trihelix transcription factor GT-3b
TrEMBL	A0A2K2B4V5	1e-132	A0A2K2B4V5_POPTR; Uncharacterized protein
STRING	POPTR_0003s10360.1	1e-134	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-36	Trihelix family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1378s0050.1.p