PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1359s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 9741.72 Da PI: 9.8774 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.6e-09 | 12 | 57 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g+WT++ + + +a + + + +W +ar +g g+t++++k ++ SapurV1A.1359s0020.1.p 12 GSWTAQQNKAFERALAVYDRDtpdRWYNVARAVG-GKTAEEVKRHYE 57 89*****************99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.421 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 5.0E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-6 | 12 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.98E-13 | 12 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 12 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.79E-6 | 14 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MASSSVSSRG SGSWTAQQNK AFERALAVYD RDTPDRWYNV ARAVGGKTAE EVKRHYELLV 60 EDVKHIESGR VPFPNYRTTG ANGHSKTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-40 | 7 | 82 | 3 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1359s0020.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011037522.1 | 3e-50 | PREDICTED: protein RADIALIS-like 2 | ||||
Refseq | XP_024455086.1 | 2e-50 | protein RADIALIS-like 2 | ||||
Swissprot | Q58FS3 | 2e-40 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2K2AV61 | 5e-49 | A0A2K2AV61_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s16270.1 | 3e-50 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 6e-38 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1359s0020.1.p |
Publications ? help Back to Top | |||
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