PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1345s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 486aa    MW: 53690 Da    PI: 6.9111
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1345s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.82.4e-1491130242
                     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                             ++++C+Ck+skClk+YCeCfa+g++C+e C+C +C+N+ e+
  SapurV1A.1345s0030.1.p  91 SHRQCHCKQSKCLKLYCECFASGSYCDE-CSCANCHNNVEN 130
                             5789***********************9.********9875 PP
2TCR49.96.1e-16176213239
                     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                             + kgC+Ck++ Clk+YCeCf+a+  Cse+CkC +CkN 
  SapurV1A.1345s0030.1.p 176 HIKGCHCKRTGCLKNYCECFQANILCSENCKCVSCKNW 213
                             789**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.1E-1590130IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.03391215IPR005172CRC domain
PfamPF036382.8E-1193127IPR005172CRC domain
SMARTSM011142.1E-17175216IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12178212IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MTSFSPPETV ESVEGEVGKS DFTPRKLVFT EFGLSPVFSA SPLPTSPQER LLSQTKLHVL  60
WRYPLSVKKS ESPRIFLPQD RTKIIDGTPK SHRQCHCKQS KCLKLYCECF ASGSYCDECS  120
CANCHNNVEN EDVRREATEC ILKRNPNAFK PKIIGSPCTP QDEGDASTDV LVMAKHIKGC  180
HCKRTGCLKN YCECFQANIL CSENCKCVSC KNWEVSELGM VATLENHCKT KANIQQANAN  240
SSNAIVSSSH SFSQESRKRT FQELSDSNMR DTEIHELTKH HSVNPVGVYV SIPTLHADCV  300
CPIASSAALG SSKPTYRSLL ADAIHPLDAI ELCSLLVAVS EAAKFLADEQ CKAEIKGVKE  360
CVQDCKKEPD IHQVVPRNQY PGSQTDITVM DKSRSCDIGI QDGGPFSSEG DDLMRDKKDK  420
LFTRSASLDQ NLNHGCNENV IKEHERLVLT CLKDCLGKLI AFGTMEGNRF EHLSTCNINQ  480
DLKPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-26862165124Protein lin-54 homolog
5fd3_B3e-26862165124Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1345s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090001e-145AC209000.1 Populus trichocarpa clone POP023-H09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299717.30.0protein tesmin/TSO1-like CXC 6
TrEMBLA0A3N7EAL70.0A0A3N7EAL7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s18550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2255944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.13e-82Tesmin/TSO1-like CXC domain-containing protein