PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1312s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 360aa    MW: 39779.7 Da    PI: 7.8818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1312s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09186233455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR+ri +++ +L+ l+P +    +k   Ka +L + ++Y++sLq
  SapurV1A.1312s0010.1.p 186 SHSLAERVRRERISERMKTLQLLVPGC----DKITGKALMLDEIINYVQSLQ 233
                             8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.85E-10180237No hitNo description
SuperFamilySSF474595.37E-16180248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15182247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-7186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAAFSNQHQP LYLDSACLPN IATPAKNMNN NMYGCFEEAG NKIDTSGFSQ IYYPEIFHET  60
PGLDGRFHQS SSHPDDHSSK VSLSDGETSL TIKQSTNSST VVDKLETGEH VTQKVAAMDR  120
KRKSANGFLN SAQSKNARKV RSKRPKKCSG DTKQEEKKPK VEKKVPGDPP TGYIHVRARR  180
GQATDSHSLA ERVRRERISE RMKTLQLLVP GCDKITGKAL MLDEIINYVQ SLQSQVELLS  240
MKLASVNPLL YDFEMDCDAF MARPERLSSL SSPLPSLQQS SPIQPIAFED TVSATTATFA  300
AAANNYPLFD NSATLFLQGM KASDFTTHQD SGNLMWDADE QRQKFLNPSG FASNLCSFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1312s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322296.20.0transcription factor bHLH137 isoform X3
TrEMBLB9IFJ20.0B9IFJ2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-52bHLH family protein