PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1304s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 469aa    MW: 51217 Da    PI: 4.9285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1304s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053593961254
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  SapurV1A.1304s0050.1.p 359 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 396
                             677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-5357399No hitNo description
SuperFamilySSF474591.09E-10357408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-8361403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAEEFQAGIC GESWWLNSSK SMFIGGLSPC STVSLPSDHM GTYNGSWATA DMVDLKPRSI  60
SCKESNNTTS VSDTSIAFLN SPKPQEANSD SGGSSILIDS TLQMMGFGLS SSSSSSDWNQ  120
ALVLSGNGRT ESYNSMLQED MDSGGLNSSR IQKDWSPKSY ASTAEDFSLD QQRLNPVTIS  180
NNSPPTCQGF SADFSMEPAG SYGYPSTLIQ SLFEPDQPQP QQVHSLFNNR SMNYLSPTAP  240
NYGTNMSELS SPSWAKVSPS IKSCLQKQQP SSLHFTNNTP YWNASPTGKN DIRACFLPSS  300
PSQFLLPAFE EKPICPSLTT EPNREEVRDS VSVVKKGSEP AFKRPRIETP SPLPTFKVRK  360
EKLGDRITAL QQLVSPFGKT DTASVLHEAI EYIKFLHAQA SVLSTPYMKN VNPIQHQLAP  420
EDKLNDLEEP NQDLRSRGLC LVPISSTFPV ANETTADFWT PTFGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1304s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472300.0EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377272.10.0transcription factor bHLH112 isoform X2
TrEMBLA9PFV30.0A9PFV3_POPTR; Uncharacterized protein
STRINGPOPTR_0011s03560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.19e-63bHLH family protein