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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1301s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HB-other | ||||||||
Protein Properties | Length: 167aa MW: 19174.5 Da PI: 9.7021 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25 | 3.1e-08 | 116 | 149 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + SapurV1A.1301s0010.1.p 116 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 149 569*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.167 | 70 | 90 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.58 | 90 | 153 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.58E-16 | 92 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-10 | 92 | 157 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.07E-11 | 93 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-25 | 97 | 153 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.7E-18 | 110 | 149 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MPKLRTKPRC MTGVSPGEGT GATMSDEDDD QAESDTNLYD GNLDGLDSMG FGPLVPTETE 60 RSLMERVRQE LKHEFKQDYK EKIVDIREEI LRKRRAGKLP GDTTSHLKAW WQTHSKWPYP 120 TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSSPSGSSS KSKRKK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 165 | RKRNWHSSPSGSSSKSKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1301s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP770000 | 0.0 | KP770000.1 UNVERIFIED: Populus tomentosa KNOTTED1-like homeobox gene 3-like (Potri.018G114100) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017948.1 | 3e-99 | PREDICTED: homeobox protein knotted-1-like LET12 | ||||
Swissprot | P48000 | 4e-90 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
Swissprot | P48001 | 3e-90 | KNAT4_ARATH; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | B9IMJ9 | 8e-98 | B9IMJ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s12200.1 | 1e-98 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 3e-88 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1301s0010.1.p |
Publications ? help Back to Top | |||
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