PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.1271s0060.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 445aa MW: 49055.7 Da PI: 9.4468 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.9 | 3.9e-40 | 178 | 253 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+ dls+ak+yhr+h+vCe hsk+++v+v+gle+rfCqqCsrfh lsefDe+k+sCrrrL++hn+rrrk+ SapurV1A.1271s0060.5.p 178 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCQKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQ 253 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.2E-32 | 172 | 240 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.445 | 176 | 253 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-37 | 177 | 257 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.0E-30 | 179 | 252 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 445 aa Download sequence Send to blast |
MEWNGKPHLQ WDWESLIMFN GITTENSKQF IPTDLETDGE KGTDSRFFYS SGSASRSGGS 60 SSDLELPYFS KNSKSASINS SSAGEVKTSK FTLEASKANS FDYNKIGKAK TASTPSTIKA 120 SAGSGDQLLG LKLGKRIYFE DACAGSHAQS SSVSTIPVPS FTPAKKLKPT VQSQHAPRCQ 180 VEGCNLDLSS AKDYHRKHRV CESHSKCQKV IVAGLERRFC QQCSRFHGLS EFDEKKKSCR 240 RRLSDHNARR RKQPGSVHLN SRVSSSLYDE RQQMSLAWDR APFVHARPNA NLTWENTYIS 300 KFTITKEPIA KPAELGGIDG RFHLPGIDLT NGIDIQHHHK SISSLPSKGK GTAAEIFNQG 360 LEEYIIPSKV EAAPESHRAL SLLSNNSWGS CEPQSISFEQ PVRTNHTTQS VLQVIPQKSP 420 PASSEYWRTG QPSTDSQLHT LTSH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-26 | 179 | 252 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 234 | 251 | KKKSCRRRLSDHNARRRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.1271s0060.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464867.1 | 0.0 | squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_024464873.1 | 0.0 | squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_024464876.1 | 0.0 | squamosa promoter-binding-like protein 2 isoform X1 | ||||
TrEMBL | A0A2K2BSW3 | 0.0 | A0A2K2BSW3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s13890.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43270.3 | 3e-71 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.1271s0060.5.p |