PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1271s0060.11.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 281aa MW: 30815.6 Da PI: 10.1652 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129 | 1.8e-40 | 178 | 253 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+ dls+ak+yhr+h+vCe hsk+++v+v+gle+rfCqqCsrfh lsefDe+k+sCrrrL++hn+rrrk+ SapurV1A.1271s0060.11.p 178 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCQKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQ 253 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-32 | 172 | 240 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.445 | 176 | 253 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.24E-38 | 177 | 257 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.3E-30 | 179 | 253 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MEWNGKPHLQ WDWESLIMFN GITTENSKQF IPTDLETDGE KGTDSRFFYS SGSASRSGGS 60 SSDLELPYFS KNSKSASINS SSAGEVKTSK FTLEASKANS FDYNKIGKAK TASTPSTIKA 120 SAGSGDQLLG LKLGKRIYFE DACAGSHAQS SSVSTIPVPS FTPAKKLKPT VQSQHAPRCQ 180 VEGCNLDLSS AKDYHRKHRV CESHSKCQKV IVAGLERRFC QQCSRFHGLS EFDEKKKSCR 240 RRLSDHNARR RKQPGSVHLN SRVSSSLYGT GIKLRLGLFS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-27 | 179 | 252 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 251 | KKKSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1271s0060.11.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464879.1 | 1e-157 | squamosa promoter-binding-like protein 2 isoform X2 | ||||
Refseq | XP_024464888.1 | 1e-157 | squamosa promoter-binding-like protein 2 isoform X3 | ||||
Swissprot | Q9S840 | 1e-64 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | B9GMK3 | 1e-155 | B9GMK3_POPTR; SBP family protein | ||||
STRING | POPTR_0001s13890.1 | 1e-156 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 3e-62 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1271s0060.11.p |