PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1253s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 300aa    MW: 33561.9 Da    PI: 5.281
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1253s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.5e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd+llv++++++G g+W++ ++  g+ R++k+c++rw +yl
  SapurV1A.1253s0080.1.p 14 KGPWTPEEDQLLVQYIQKHGLGCWRSLPKNAGLLRCGKSCRLRWTNYL 61
                            79******************************99************97 PP
2Myb_DNA-binding42.61.4e-1367112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++++ E+  +v+++ +lG++ W+  a+ ++ gRt++++k++w+++l
  SapurV1A.1253s0080.1.p  67 RGPFSPAEEATIVHLHGMLGNK-WAYMASQLP-GRTDNEIKNFWNTHL 112
                             89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129424.886965IPR017930Myb domain
SuperFamilySSF466895.99E-3011108IPR009057Homeodomain-like
SMARTSM007171.3E-151363IPR001005SANT/Myb domain
PfamPF002493.0E-171461IPR001005SANT/Myb domain
CDDcd001679.22E-131661No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2565116IPR009057Homeodomain-like
SMARTSM007171.0E-1166114IPR001005SANT/Myb domain
PROSITE profilePS5129417.41766116IPR017930Myb domain
PfamPF002498.4E-1267112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRGPCCDKD GVKKGPWTPE EDQLLVQYIQ KHGLGCWRSL PKNAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SPAEEATIVH LHGMLGNKWA YMASQLPGRT DNEIKNFWNT HLKKRLTSIG  120
PKLQINQSSS SSEPINIKCE SPSTRHMVQW ESARVEAEAR LSMQSLFLKS KSTAKSHPDI  180
FLQLWKSEVG EAFRIIEEKD GKTSESIVSD EPLSIKNEPV LLDDTVSPMP SKTTTVIDTT  240
QEQEEDTCKP NEDVMTVSDS IGSNEFADST DTALKLLLDF PGGNDMEFIG EESEFFQLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1253s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474410.0EF147441.1 Populus trichocarpa clone WS01231_B05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030104.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ9M2D93e-93MYB17_ARATH; Transcription factor MYB17
TrEMBLA9PGF10.0A9PGF1_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-95myb domain protein 17