PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1252s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 93aa    MW: 10566 Da    PI: 7.5194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1252s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.3e-0718571554
                            HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                            +i +  ++Lr llP+ + + +s K+s + +L+++++YI++L
  SapurV1A.1252s0010.1.p 18 QIIDLVSKLRHLLPEiR-QRRSDKVSASKVLQETCNYIRNL 57
                            5667779********77.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.877357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-81874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-51857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-82176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRQSS APGITDDQII DLVSKLRHLL PEIRQRRSDK VSASKVLQET CNYIRNLHKE  60
VDDLSERLSQ LLETIDSDSP EAAIIRSLIM QY*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1252s0010.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474931e-122EF147493.1 Populus trichocarpa clone WS01231_N01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323848.22e-50transcription factor PRE1
SwissprotQ9LJX11e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLB9IJW05e-49B9IJW0_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11760.18e-50(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-44bHLH family protein