PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1230s0050.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family E2F/DP
Protein Properties Length: 276aa    MW: 30087.5 Da    PI: 6.8081
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1230s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.91.3e-26100182271
                 E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                             ++++Lr+++ k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD++NVL+al++i+k +k+ei+wkg
  SapurV1A.1230s0050.2.p 100 SGRGLRQFSIK---VCEKVESkGTTTYNEVADELVAEfadpiksvstpdqqqyDEKNIRRRVYDAMNVLMALDIISK-DKKEIQWKG 182
                             689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094049.8E-1151275IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.7E-4495188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.6E-3399182IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.8E-25101182IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-20102183IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.74E-33187275IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.49E-32189274No hitNo description
SMARTSM011381.8E-34189275IPR014889Transcription factor DP, C-terminal
PfamPF087814.7E-31190275IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVTGGAHLED GDRHPSSASR RGGGGGATTG SWASGQSVST SGSVGSPSSR SEQAMATPAS  60
DNTFLRLNHL DIHADDAATQ DAAGNKKKKR GQRAVGADKS GRGLRQFSIK VCEKVESKGT  120
TTYNEVADEL VAEFADPIKS VSTPDQQQYD EKNIRRRVYD AMNVLMALDI ISKDKKEIQW  180
KGLPRTSLSD IEELKAERLG LRNRIEKKAA YLQELEEQFV GLQNLIQRNE QLYSSGNVPS  240
GGVSLPFILV QTRPHATVEV EISEDMQLVH FDFNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-3793187193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1230s0050.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1819980.0AF181998.1 Populus tremula x Populus tremuloides transcription factor DP1 (DP1) mRNA, complete cds.
GenBankAY3073730.0AY307373.1 Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018748.11e-176PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-141DPB_ARATH; Transcription factor-like protein DPB
TrEMBLB9IFR21e-163B9IFR2_POPTR; Uncharacterized protein
STRINGXP_010241817.11e-161(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-131Transcription factor DP