PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1219s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 342aa    MW: 39020.3 Da    PI: 7.396
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1219s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.6e-5381371129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPtdeel+++yLkkkv+ +k+++ ev++evd++k+ePw+L++  k+ +  ++ewyfFs+rd+ky+tg+r+nrat++g+Wk
  SapurV1A.1219s0030.1.p   8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVVREVDLNKMEPWELQEtcKIGStPQNEWYFFSHRDRKYPTGSRTNRATNAGFWK 93 
                             69****************************.99**************963433332456**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             atg+dk + + + +++g++ktLvfy+grap+g+ktdW+mhe+rle
  SapurV1A.1219s0030.1.p  94 ATGRDKCIRN-SYNKIGMRKTLVFYRGRAPHGQKTDWIMHEFRLE 137
                             *********9.8899***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-586162IPR003441NAC domain
PROSITE profilePS5100557.1728162IPR003441NAC domain
PfamPF023652.1E-279136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAASTGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVV REVDLNKMEP WELQETCKIG  60
STPQNEWYFF SHRDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYNKIGM RKTLVFYRGR  120
APHGQKTDWI MHEFRLEDGT GDDAQGNSAE EDGWVVCRVF KKKNLFKVSN DGGAASMNSS  180
DQQLHTSSSN QYSHYSSLRH HHNHNHNHGS IQQALEPNKP DQLAFHYHHT ETPHQYSLFP  240
SQTLMPTDHK PLGYGYSALP SESKACETGL EVGAQMVSRR DDHLGMNEWD MLDRDIIVTS  300
HLGNEDSSKA VRFQDANAPS VHPLVNQLSL RGEMDFWGYG K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-51816417167NO APICAL MERISTEM PROTEIN
1ut4_B4e-51816417167NO APICAL MERISTEM PROTEIN
1ut7_A4e-51816417167NO APICAL MERISTEM PROTEIN
1ut7_B4e-51816417167NO APICAL MERISTEM PROTEIN
3swm_A4e-51816420170NAC domain-containing protein 19
3swm_B4e-51816420170NAC domain-containing protein 19
3swm_C4e-51816420170NAC domain-containing protein 19
3swm_D4e-51816420170NAC domain-containing protein 19
3swp_A4e-51816420170NAC domain-containing protein 19
3swp_B4e-51816420170NAC domain-containing protein 19
3swp_C4e-51816420170NAC domain-containing protein 19
3swp_D4e-51816420170NAC domain-containing protein 19
4dul_A4e-51816417167NAC domain-containing protein 19
4dul_B4e-51816417167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1219s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103821e-102AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319872.20.0protein BEARSKIN2
SwissprotQ9SV871e-140BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A2K1Y3D90.0A0A2K1Y3D9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s09280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-137NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]