PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1216s0090.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 300aa    MW: 33661.9 Da    PI: 8.9675
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1216s0090.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.1e-15218254135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++Cg +   Tp +Rrgp g++tLCnaCGl+++ kg+
  SapurV1A.1216s0090.4.p 218 CQHCGISAkdTPAMRRGPAGPRTLCNACGLMWANKGT 254
                             *****88778************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.8E-481116IPR010399Tify domain
PROSITE profilePS5132012.09181116IPR010399Tify domain
PfamPF062001.3E-785115IPR010399Tify domain
PROSITE profilePS5101713.314149191IPR010402CCT domain
PfamPF062032.1E-16149191IPR010402CCT domain
SMARTSM004015.4E-11212265IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-11217270No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14217259IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.73E-13217261No hitNo description
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
PfamPF003203.6E-13218254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MIKQNMELVN HQRQKKGRKG RDHHNRGVMQ IEGVDYGNGY GFDDGMMEMI NGGVVEEVRQ  60
INTNSNHSGV VIGNRNDRVV ETTRTSELTI AFEGEVYVFP TVTPSKVQAV LFLLGEPETS  120
TIAPNSEFLL QQNARSAGDA SQGLKVSRRI ASLERFREKR KERCFEKKVR YTCRKEVAQR  180
MHRKKGQFAS SNDCYSTDTG NWEPSNGIPN PEFVLLRCQH CGISAKDTPA MRRGPAGPRT  240
LCNACGLMWA NKGTLRDLNK GGQHISFNQN EPESQEESKP VPLDSENSMR PNEQCRKIC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1216s0090.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166011e-156AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445182.10.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL73e-59GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2K1X3260.0A0A2K1X326_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06970.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-53ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]