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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1216s0090.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GATA | ||||||||
Protein Properties | Length: 322aa MW: 36204.7 Da PI: 8.153 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.6 | 2.3e-15 | 218 | 254 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg + Tp +Rrgp g++tLCnaCGl+++ kg+ SapurV1A.1216s0090.3.p 218 CQHCGISAkdTPAMRRGPAGPRTLCNACGLMWANKGT 254 *****88778************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 4.8E-4 | 81 | 116 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.091 | 81 | 116 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.4E-7 | 85 | 115 | IPR010399 | Tify domain |
Pfam | PF06203 | 2.3E-16 | 149 | 191 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.314 | 149 | 191 | IPR010402 | CCT domain |
SMART | SM00401 | 5.4E-11 | 212 | 265 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.1E-14 | 217 | 259 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.67E-13 | 217 | 261 | No hit | No description |
SuperFamily | SSF57716 | 2.38E-11 | 217 | 268 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 218 | 245 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.0E-13 | 218 | 254 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MIKQNMELVN HQRQKKGRKG RDHHNRGVMQ IEGVDYGNGY GFDDGMMEMI NGGVVEEVRQ 60 INTNSNHSGV VIGNRNDRVV ETTRTSELTI AFEGEVYVFP TVTPSKVQAV LFLLGEPETS 120 TIAPNSEFLL QQNARSAGDA SQGLKVSRRI ASLERFREKR KERCFEKKVR YTCRKEVAQR 180 MHRKKGQFAS SNDCYSTDTG NWEPSNGIPN PEFVLLRCQH CGISAKDTPA MRRGPAGPRT 240 LCNACGLMWA NKGTLRDLNK GGQHISFNQN EPVTPDFKPL NMELENPFAN PEEEESQEES 300 KPVPLDSENS MRPNEQCRKI C* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1216s0090.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216601 | 1e-156 | AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043038.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X2 | ||||
Swissprot | Q8GXL7 | 8e-59 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A3N7G433 | 0.0 | A0A3N7G433_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s06970.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-52 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1216s0090.3.p |
Publications ? help Back to Top | |||
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