PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1190s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HSF

Protein Properties

Length: 483aa MW: 53713.5 Da PI: 5.6738

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1190s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.1	8.1e-35	18	108	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+ye+++d++++e++sws+n+nsfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k SapurV1A.1190s0030.1.p 18 FLMKTYEMVDDSSTDEIVSWSSNKNSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEDFLK 95 9**************************************************************999.........****** PP XXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkk 101 ++k+ll++i+r+k SapurV1A.1190s0030.1.p 96 DQKHLLKNIHRRK 108 *********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	5.8E-59	14	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.98E-36	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.2E-37	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.8E-19	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.5E-30	18	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-19	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	57	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-19	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MEAGSSPSSG AGGGPAPFLM KTYEMVDDSS TDEIVSWSSN KNSFVVWNPP EFARLLLPTF 60 FKHNNFSSFI RQLNTYGFRK IDPEKWEFAN EDFLKDQKHL LKNIHRRKPI HSHSNPPGSL 120 VDPDRAAYEE EIDKLSRDKA KLKASIVGLS QQRSSAKIQV EDLTQRIDTM QQRQEKLLSF 180 FEKAVQNPAF VEHLACKIES MDFSAYGKKR RLPQADHSMP TAENSFVENH CSSRPESNVI 240 HQDFSNTLRL ELSQAVSDIN LISRSTLSSN EEGGSPQRKI SELNPKDGPT RTSGLHLAPE 300 TLELSDTGTS YTFKVNPAVP RDLPASGSQA LHSLQANLVS NEEGDGNISC QLNLTLASSA 360 VQVNKNPYLA RILGQEIAKP PESRNESNKD SDMRVIQNLN LGNESTTLSC SQEIPNNNQA 420 PASAPARAND VFWEQFLTER PGSSENEEAS SNYRANSYDE QDERRLGFGV PRNAKNMEQL 480 SL*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MEAGSSPSSG AGGGPAPFLM KTYEMVDDSS TDEIVSWSSN KNSFVVWNPP EFARLLLPTF  60
FKHNNFSSFI RQLNTYGFRK IDPEKWEFAN EDFLKDQKHL LKNIHRRKPI HSHSNPPGSL  120
VDPDRAAYEE EIDKLSRDKA KLKASIVGLS QQRSSAKIQV EDLTQRIDTM QQRQEKLLSF  180
FEKAVQNPAF VEHLACKIES MDFSAYGKKR RLPQADHSMP TAENSFVENH CSSRPESNVI  240
HQDFSNTLRL ELSQAVSDIN LISRSTLSSN EEGGSPQRKI SELNPKDGPT RTSGLHLAPE  300
TLELSDTGTS YTFKVNPAVP RDLPASGSQA LHSLQANLVS NEEGDGNISC QLNLTLASSA  360
VQVNKNPYLA RILGQEIAKP PESRNESNKD SDMRVIQNLN LGNESTTLSC SQEIPNNNQA  420
PASAPARAND VFWEQFLTER PGSSENEEAS SNYRANSYDE QDERRLGFGV PRNAKNMEQL  480
SL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-21	7	107	15	129	Heat shock factor protein 1
5d5v_B	3e-21	7	107	15	129	Heat shock factor protein 1
5d5v_D	3e-21	7	107	15	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1190s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP013983	0.0	KP013983.1 Populus simonii heat shock transcription factor A5a (HsfA5a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006373092.2	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-168	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A0N7DK21	0.0	A0A0N7DK21_9ROSI; Heat shock transcription factor A5a
STRING	POPTR_0017s08630.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-165	HSF family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1190s0030.1.p

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]