PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1186s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 807aa    MW: 91193 Da    PI: 4.8798
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1186s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS214.55.7e-6673593374
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             + Ll+cA+a+++gdl+la++l++ +        d+  +l +yf+eAL +r++r    +y   +p++  ++ + ++ +++ l    +P
  SapurV1A.1186s0040.1.p   7 NKLLDCAKAIEDGDLNLADSLIKDVL------TDSDDKLFKYFVEALVRRVYR----IYP-KNPRPLVPSCTGSRCSFDYL---FFP 79 
                             78********************9985......57889****************....442.23333333333444455444...57* PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfd.isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                             ++ f+ +t+ +aI +a+ g++r+ +iDf+ i  G  W  Ll+   +R++g+ s+ +T +g+  s++ + l+e+ e+L   A++l ++
  SapurV1A.1186s0040.1.p  80 FFWFTEFTTCSAIADALTGKKRIQVIDFSlIASGQRWGWLLEDYVKRSGGAVSFHLTSIGPILSKKGNYLNEILEKLPAKAKKLPIE 166
                             ****************************95678888*************************9999********************** PP

                    GRAS 176 fefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             fe + ++a++ +++   +L++++   +E+++V + ++lh+ll++++++es    vL+ +k+l+P++++vveqea++n+++Fle f++
  SapurV1A.1186s0040.1.p 167 FEVKHVAANTPAEIVEAALKLERssqDETIVVRWEFELHKLLAQPGATES----VLSKLKELKPEIMIVVEQEASLNGQDFLECFSN 249
                             *****999999999889998888888**********************99....********************************* PP

                    GRAS 260 aleyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                             +++yys +fdsl + ++   ++ ++  E ++++r+i+n+va++ ++++ r +t+++Wre l ++GF+ v+l+    +q k +l  + 
  SapurV1A.1186s0040.1.p 250 SINYYSIVFDSLdNDNFDDGNHCKALWE-MYFRRQISNLVAQQSTDKIVRLQTFAEWRETLFHSGFHHVRLQ----TQFKGILFDHL 331
                             ************6667766666666665.66**************************************997....68899999988 PP

                    GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + yr+ee++  lvl+  d pL+++SaW+
  SapurV1A.1186s0040.1.p 332 TE-YRIEEKNRHLVLYRDDYPLLFTSAWK 359
                             55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.3671344IPR005202Transcription factor GRAS
PfamPF035142.0E-637359IPR005202Transcription factor GRAS
SMARTSM006143.6E-15755805IPR003656Zinc finger, BED-type
PROSITE profilePS5080812.892755806IPR003656Zinc finger, BED-type
SuperFamilySSF576672.86E-7758803No hitNo description
PfamPF028928.7E-9758800IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MTAPGVNKLL DCAKAIEDGD LNLADSLIKD VLTDSDDKLF KYFVEALVRR VYRIYPKNPR  60
PLVPSCTGSR CSFDYLFFPF FWFTEFTTCS AIADALTGKK RIQVIDFSLI ASGQRWGWLL  120
EDYVKRSGGA VSFHLTSIGP ILSKKGNYLN EILEKLPAKA KKLPIEFEVK HVAANTPAEI  180
VEAALKLERS SQDETIVVRW EFELHKLLAQ PGATESVLSK LKELKPEIMI VVEQEASLNG  240
QDFLECFSNS INYYSIVFDS LDNDNFDDGN HCKALWEMYF RRQISNLVAQ QSTDKIVRLQ  300
TFAEWRETLF HSGFHHVRLQ TQFKGILFDH LTEYRIEEKN RHLVLYRDDY PLLFTSAWKP  360
DPTQPNSESS GSWNQESSLR AEATIPGGSS GPPILAGTVS SSSFLDDHPD DPHVIIEGNV  420
WSPECFSINQ IAASAEIFDM MEDICHVHYL PLALTWMSDR RVLHLEKSAC YLNDFTMVEF  480
MEACGEHHLE EGKGVAGKAL QLNSMYFVSD ISDPKENNDV KGFPSILVAW DFLLHGIVAI  540
KLESVHISSI NYVLEFFLPL EMKEISAQRL LVNEIVSILQ KNSRNSWRVC NEELSRANIG  600
SEVEIMAGEV GTTTITPAAI PESQPPELSE IGSLNSSQLR YLCNIFNAPV DEVRVPETHD  660
QEVEQQNSIF RPAADQFNTS EVEIMAEEVG TNTITQAAIP ASQPPELSGD EVRVPETHDQ  720
EVEQQNSIFR PPAAPFPEYE VDSCHCNTGT SNKRRRTSEV WQYFDEVREN GEVWAKCRNC  780
SKKYRGESTR GTTNLRKHLR LCTGKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-201236026380Protein SCARECROW
5b3h_A7e-201236025379Protein SCARECROW
5b3h_D7e-201236025379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1186s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372781.20.0uncharacterized protein LOC18106830
TrEMBLA0A2K1R7I70.0A0A2K1R7I7_POPTR; Uncharacterized protein
STRINGPOPTR_0017s04990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1586236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-55GRAS family protein