PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1185s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 220aa    MW: 24252.9 Da    PI: 7.4556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1185s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-133783354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            ++h+e+ErrRR+riNs +++Lr l+P a     +K++Ka+ L  ++  Ik+L
  SapurV1A.1185s0010.1.p 37 KSHSEAERRRRERINSHLATLRGLVPCA-----EKMDKATLLAAVISEIKDL 83
                            58*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2813483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-113783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-133886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-133888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-114089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.25E-4122190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVSQALMLDA EKGELVKAPA RIGKKGISEA KDLGALKSHS EAERRRRERI NSHLATLRGL  60
VPCAEKMDKA TLLAAVISEI KDLKKNASEA CEGLLVPMDD DEVKVETFFD GSEGGTLYFK  120
ASICCDHRPE LLSDFRNAID VLPLKMMNAE ISTLGSRLKT EFVFTVRRNK NGLEDAEAVQ  180
LLTDSIHQTL KSVLEKGSAS PEYSPWTTLS NKRMRVTFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1185s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045927.11e-118PREDICTED: transcription factor bHLH30-like isoform X2
TrEMBLA0A2K1YGE91e-117A0A2K1YGE9_POPTR; Uncharacterized protein
STRINGXP_002522566.11e-104(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-31bHLH family protein