PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.1183s0080.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 289aa MW: 31585.2 Da PI: 7.0684 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00077 | 194 | 232 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +++ + +K + a++L +A+ YI+ Lq SapurV1A.1183s0080.2.p 194 RKEKLGDRITVLHQMVSPF-----GKTDTASVLLEAIGYIRFLQ 232 5566777888888888877.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.661 | 182 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-6 | 192 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-10 | 192 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.39E-5 | 192 | 236 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 289 aa Download sequence Send to blast |
MMAGNPSWWS MHPPSQQTSA LLSSSPSIFP SQYVFGSSSF SSNSLPDNQE LPQSWNQLLL 60 GGSSGDEDRY GMSQFQPKKL GSWEDQILSP SPCISVVADV KQEVSHNNSL YGHGDEDFQS 120 ARPAAWPQVM PVSSPRSCVT SLGSTNILDF SYNKADGTNQ PPDQSSESNS SATGGACKKA 180 RVQPSSSSQP LKVRKEKLGD RITVLHQMVS PFGKTDTASV LLEAIGYIRF LQGQIEALSS 240 PYLATASPNL RNHHQPVSTH IYIYIYRHTH TAPHFPMQEQ VTRLIVFN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.1183s0080.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299721.1 | 1e-163 | transcription factor bHLH68 isoform X4 | ||||
Refseq | XP_024455225.1 | 1e-163 | transcription factor bHLH68 isoform X3 | ||||
Swissprot | Q8S3D1 | 5e-38 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A2K2BZV4 | 1e-161 | A0A2K2BZV4_POPTR; Uncharacterized protein | ||||
TrEMBL | B9GG53 | 1e-161 | B9GG53_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s18660.1 | 1e-162 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29100.1 | 1e-38 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.1183s0080.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|