PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1168s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 396aa    MW: 44900.1 Da    PI: 4.4162
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1168s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.15.3e-14166249286
                trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             Wt++e+ +L++a  e+  + ++++l+   W+ev++k+  + ++er+ +qC+++++ l+k+yk ++    +  ++  s+++yf++++
  SapurV1A.1168s0060.1.p 166 WTERETFVLLDAWGEKFLQRGKKSLRSDEWQEVAEKVsDKSKIERTDTQCRNRLDTLKKKYKIERIKLAE--DGGASKWVYFKKMD 249
                             *************************************667789*******************99999888..577889*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-4165236IPR009057Homeodomain-like
PfamPF138375.0E-21165249No hitNo description
PROSITE profilePS500906.481166223IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDDIEDDARY PQNPYGENNQ QSYVSNRHKL PVGNATYSRP VDNQYAVGEN EDSDDEEEGE  60
HELREEAGEN NQTNGIHYAG KDVDVDEEEE EAVGDDEDED EDEDEKYSRG IADDDDDDNI  120
ERHPKKRKLK SLVSSYEFAP RIPVPPVAAL AVPKPSVGGR NPLTDWTERE TFVLLDAWGE  180
KFLQRGKKSL RSDEWQEVAE KVSDKSKIER TDTQCRNRLD TLKKKYKIER IKLAEDGGAS  240
KWVYFKKMDI LMSTSAQQGG LSCGLDSGEY VSLNPKVYSN HSNGLDEMRD SPGNSELARD  300
DDSDGLPPKK RRLGRDCIGQ SSFGLLADSI HKFSDIYEKI ESSKRQQMLE LEKLRMDFQR  360
DLEMQKRQII ERAQAAIAKI HQVGEEEDNI SANSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1168s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247870.0CU224787.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002690.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A3N7FTG40.0A0A3N7FTG4_POPTR; Uncharacterized protein
STRINGPOPTR_0003s05470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-63Trihelix family protein