PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1165s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 774aa    MW: 84714.2 Da    PI: 6.6566
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1165s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.71.7e-1263877452374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              +lLl+cAeavs++d+e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y +lp+ ++s  ++++ ++a+++f+ + 
  SapurV1A.1165s0100.1.p 387 LTLLLQCAEAVSADDFEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVNSCLGIYTTLPSMAQS--HTQKMASAFQVFNGIG 471
                             579************************************************************999887..5899999********* PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                             P++kfsh+taNqaI ea+e+e+rvHiiD+d++qGlQWp L+q LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+p
  SapurV1A.1165s0100.1.p 472 PFVKFSHFTANQAIQEAFEREDRVHIIDLDVMQGLQWPGLFQILASRPGGPPYVRLTGLGT----SLEALEATGKRLSDFAHKLGLP 554
                             *************************************************************....9********************* PP

                    GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                             fef + va+++ +le+e+L+v+++Ea+aV++    h+l+d ++s ++    +L l+++l Pkvv+vveq+++h ++sFl rf+ea++
  SapurV1A.1165s0100.1.p 555 FEFIP-VAEKVGNLEPERLNVSKREAVAVHWLQ--HSLYDVTGSDTK----MLCLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIH 633
                             *****.7*************************9..999988999888....**********************.899********** PP

                    GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                             yysalfdsl a++++eseer++vE++ll+rei+nv+a+ g +r     ++++Wre+l+++GFk ++l  +aa+qa lll +++sdgy
  SapurV1A.1165s0100.1.p 634 YYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAMGGPSRGGGDVKFHNWREKLQQSGFKGISLAGNAATQATLLLGMFSSDGY 720
                             *************************************************************************************** PP

                    GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                             ++ e++g+l lgWkd  L+++SaWr
  SapurV1A.1165s0100.1.p 721 TLVEDNGTLKLGWKDLCLLTASAWR 745
                             ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577126No hitNo description
PROSITE profilePS5098563.065360725IPR005202Transcription factor GRAS
PfamPF035145.8E-124387745IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MVRKRMASEM MEVQSTISTP HSLTSCSNSN NINPNNPSSI LYPHLNYSVT TSTQPPSPTN  60
LEEIKSGGSA SPSVSWFLSP TLSTDLITSC NDTRTRTQSH LPAVCGFSGL PLFPPAEIER  120
NNIRSNAAAA PPPGLIPTSG TAPATLSSAS MEDAISATAW IDGIIKDLLH TSTSVSIPQL  180
VQNVREIIYP CNPNLASLLE YRLRSLTDPM ILPPNIYPVE RRTKEAAAAV PLPLQSHYNQ  240
GHAANSGLTI DLDNIVSNSA PPVSSHAGHY SNWGPTPPLI CQPNRQRQHQ QPQIHLVHHD  300
QHLRNQQQKQ GESPSSTSNV TPTILAVNKG QSPQQQEQYQ QQERSSSAET EQVTTTTSPP  360
SSSAEASRDK KEEVRQQKRD EEGLHLLTLL LQCAEAVSAD DFEEANKMLL EISELSTPFG  420
TSAQRVAAYF SEAMSARLVN SCLGIYTTLP SMAQSHTQKM ASAFQVFNGI GPFVKFSHFT  480
ANQAIQEAFE REDRVHIIDL DVMQGLQWPG LFQILASRPG GPPYVRLTGL GTSLEALEAT  540
GKRLSDFAHK LGLPFEFIPV AEKVGNLEPE RLNVSKREAV AVHWLQHSLY DVTGSDTKML  600
CLLQRLAPKV VTVVEQDLSH AGSFLGRFVE AIHYYSALFD SLGASYGEES EERHVVEQQL  660
LSREIRNVLA MGGPSRGGGD VKFHNWREKL QQSGFKGISL AGNAATQATL LLGMFSSDGY  720
TLVEDNGTLK LGWKDLCLLT ASAWRPFHVT IETATTTPHH HHHNHHHHRF VTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03707463380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1165s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443296.10.0LOW QUALITY PROTEIN: protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2K1XFN60.0A0A2K1XFN6_POPTR; Uncharacterized protein
STRINGPOPTR_0016s15060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein