PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1156s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 348aa    MW: 37998.7 Da    PI: 9.7053
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1156s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix353.7e-114585141
                trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer 41
                            +Wt +e+ aLi+a+r+++ +lrrg+lk+++W+ev++++++r
  SapurV1A.1156s0130.1.p 45 CWTPDETVALIDAYRDKWYTLRRGNLKANHWQEVADAVSRR 85
                            8************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-94495No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSTPTNTGSP SPSQDLTPLQ ATALQALPAP STQPSTNPRR LPPPCWTPDE TVALIDAYRD  60
KWYTLRRGNL KANHWQEVAD AVSRRCPAAS PPKTAIQRAR SMPVSRFSSS WVHFKRMDGM  120
EKGPQAKADY NSESEGDDND DDNEDDGDIL GSYLENYRTP GNVMNTRSIQ KLYRNGIGNP  180
GTGSGNNGLS GGSSGMGSGN AGGFRIRIPT GVSIAQPGPK FYAKAEQKYG GSPSMGVNAS  240
PNPNQKPNYG GVGSSSRVMR GGEEMGKKRE RDPMEDLVAA IKVLGDGFVR MEQMKMEMAR  300
EMETMRMEME MKRTEMIIES QQRIVEAFAK ALSEKKKRPK RMPSPES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1156s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2772201e-103GU277220.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.
GenBankGU2772221e-103GU277222.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032549.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLB9MV520.0B9MV52_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.19e-64Trihelix family protein