PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1150s0140.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 321aa    MW: 35476.5 Da    PI: 6.886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1150s0140.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-084087354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                              +  rE+ RRdr+N+ f eL   l ++     ++++Ka+iL  +v+ +k+L
  SapurV1A.1150s0140.3.p 40 IQKADREKLRRDRLNEHFVELGNTLDPD----RPRNDKATILADTVQLLKDL 87
                            56789********************997....799**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.4813787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-63887No hitNo description
SuperFamilySSF474592.22E-1238107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1238109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-64087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-64393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDPFTDFNPP PPDPRQLAST LPNPISSEAE LKDSVAARKI QKADREKLRR DRLNEHFVEL  60
GNTLDPDRPR NDKATILADT VQLLKDLTSK VDKLKAEHAA LSEESRELTL EKNDLREEKA  120
SLKTDVENLN IQCQQQLRTT YPWASMDHSV MMATPSYPFP MPVPMPHGPI PMHPSMQPYP  180
FYGNQNPAVI HNPCSTFVPY IAPNTLVDQQ STQRVSSLAQ SASRSHVSVK QDSKNKSSGE  240
RKVERSEDSN DVTTDLELKT PGSTADQDLT PVQRKSKKST GKESSFSKGS SSSRCSSSRS  300
VQDSSSNSVV GSTKVDDLDK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1150s0140.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312979.20.0transcription factor bHLH121
SwissprotQ9LT234e-92BH121_ARATH; Transcription factor bHLH121
TrEMBLB9HRA90.0B9HRA9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s13220.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.21e-86bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]