PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1150s0140.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 324aa MW: 35820.9 Da PI: 6.8796 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.5e-08 | 40 | 87 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N+ f eL l ++ ++++Ka+iL +v+ +k+L SapurV1A.1150s0140.1.p 40 IQKADREKLRRDRLNEHFVELGNTLDPD----RPRNDKATILADTVQLLKDL 87 56789********************997....799**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.481 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.33E-6 | 38 | 87 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.2E-12 | 38 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-12 | 38 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-6 | 40 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-6 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MDPFTDFNPP PPDPRQLAST LPNPISSEAE LKDSVAARKI QKADREKLRR DRLNEHFVEL 60 GNTLDPDRPR NDKATILADT VQLLKDLTSK VDKLKAEHAA LSEESRELTL EKNDLREEKA 120 SLKTDVENLN IQCQQQLRTT YPWASMDHSV MMATPSYPFP MPVPMPHGPI PMHPSMQPYP 180 FYGNQNPAVI HNPCSTFVPY IAPNTLVDQQ STQRVSSLAQ SASRSHVSVK QDSKNKSSGE 240 RKVERSEDSN DVTTDLELKT PGSTADQCLQ DLTPVQRKSK KSTGKESSFS KGSSSSRCSS 300 SRSVQDSSSN SVVGSTKVDD LDK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1150s0140.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312979.2 | 1e-180 | transcription factor bHLH121 | ||||
Swissprot | Q9LT23 | 4e-91 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | B9HRA9 | 1e-179 | B9HRA9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s13220.1 | 1e-180 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2282 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.2 | 1e-85 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1150s0140.1.p |
Publications ? help Back to Top | |||
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