PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1139s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 323aa    MW: 35181.1 Da    PI: 4.6189
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1139s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-142066448
                            -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEE CS
                  SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklye 48
                            e   +r+vt++kRr+g++ KA EL+  Cda++a+++ s  s+ k+y 
  SapurV1A.1139s0030.1.p 20 ETAEQRSVTLTKRRQGLFNKAAELCRICDARIAIMVSStgSKEKVYA 66
                            55678****************************98865114555655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-17870IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.615969IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-91131IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-161281IPR002100Transcription factor, MADS-box
CDDcd002664.24E-181282No hitNo description
PfamPF003195.5E-132267IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-93146IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-94667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MLLLKFSMGR TRKIPMARRE TAEQRSVTLT KRRQGLFNKA AELCRICDAR IAIMVSSTGS  60
KEKVYAFGHS SVDAVFNKFL DDFPDSEAAG ASHGEEIKSA CNSLHEDIKA LESEVTTLIM  120
QNKKINAGGV SWDFLDEFEM SGSVQELQDA VKSLESLLGK AKKKMNNPTG DGNLGISNII  180
EPRSDGYLAL GFKPHYGSSS SLDDKVCQNS ANNVEFISAN YSDSWATSDG SPGNNGIDFQ  240
GEVDIDYIWD CIPSLDFNSD SDRVNYGCAT SRTAYGSDSR SQENGDNVFP ASLDSGYLEA  300
MEFLDYGIKT IPGSVFGDIK QH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164GKAKKKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1139s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459550.11e-108agamous-like MADS-box protein AGL62
TrEMBLA0A2K2A8H01e-106A0A2K2A8H0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14660.16e-97(Populus trichocarpa)
STRINGPOPTR_0012s11190.17e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14582714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49490.12e-18AGAMOUS-like 83