PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1130s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 192aa    MW: 20690.2 Da    PI: 4.5198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1130s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-191565155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++y+G+r++k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g
  SapurV1A.1130s0090.1.p 15 PRYRGIRRRK-WGKWVSEIREP---GKKTRIWLGSYEMPEMAAAAYDVAALHLRG 65
                            68*****998.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-131565IPR001471AP2/ERF domain
CDDcd000181.89E-201574No hitNo description
PROSITE profilePS5103223.091673IPR001471AP2/ERF domain
SMARTSM003802.1E-331679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-301674IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-211674IPR016177DNA-binding domain
PRINTSPR003671.3E-121728IPR001471AP2/ERF domain
PRINTSPR003671.3E-125575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEGRIREDHL GVSPPRYRGI RRRKWGKWVS EIREPGKKTR IWLGSYEMPE MAAAAYDVAA  60
LHLRGRGAQL NFPEMVDCLP QPASSSAEDV QMAAQEAASL FRRPAGCSEA VSGDSGGGGS  120
GGGGGGIGPV RVGLSPSQIQ AINEAPLDSP KMWMELDGAL LLEEPVIMGD DICADYSDEW  180
GEMQHDSIWD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-151778668ATERF1
3gcc_A1e-151778668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1130s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559385e-90EF155938.1 Populus trichocarpa TINY-like protein (TINYL19) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325520.21e-107ethylene-responsive transcription factor ERF022
SwissprotQ9LQ283e-51ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLB9IQB71e-105B9IQB7_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10430.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.14e-51ERF family protein