PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1110s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25972.4 Da PI: 10.0436 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31 | 4.6e-10 | 171 | 217 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++i s++ L++l+P + +k Ka +L + ++Y++sL SapurV1A.1110s0020.1.p 171 NHSLAERARRQKISSKMKLLQSLVPGC----DKITGKALVLDEIIRYVQSL 217 79************************9....899***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.76E-8 | 165 | 222 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-13 | 165 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.754 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-14 | 168 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-7 | 171 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-8 | 173 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEGFSYQQHH HASVVDEFQH DSNTIKSGTL FSPNLLHECL QVSPLNAERI FETIHDDDNS 60 SAKVPLISTT DHSSTIPRHN SCSFRVADLQ YGEENRDSHE AMTPTWWQLR KHSSPPIKLK 120 RESSGQKLNP GSSVSRNAKR VRPAKKQKKV PVELPAGCVH VRARRGEATD NHSLAERARR 180 QKISSKMKLL QSLVPGCDKI TGKALVLDEI IRYVQSLKDR VQVRIKEDTA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1110s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020986.1 | 1e-124 | PREDICTED: transcription factor bHLH137-like | ||||
TrEMBL | A0A3N7EW88 | 1e-117 | A0A3N7EW88_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s16300.1 | 1e-125 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16101 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 6e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1110s0020.1.p |