PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1092s0100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 197aa MW: 22426.1 Da PI: 4.4434 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.7 | 1.5e-29 | 11 | 129 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGf F+Ptdeel+ ++L++k++ ++ ++i++++iy +Pw+L+ k+ +e++wy+Fs+ +n+at++g+Wk + SapurV1A.1092s0100.1.p 11 LPPGFIFSPTDEELILHFLHRKASLLPCYP-DIIPDLGIYPQDPWQLEGKALWSENQWYYFSQVMM-------ENQATENGFWKPSD 89 79*************************888.89**************977777899******9866.......5779********** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++s+ +g++vg kk Lv+ g++ +t+W+m+ey+l SapurV1A.1092s0100.1.p 90 IEEPIFSTsTGKKVGSKKHLVYCIGTEDA--ETNWMMQEYHL 129 ******9878999**********988877..9********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-39 | 7 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.259 | 11 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-20 | 12 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGDHGCSGNN LPPGFIFSPT DEELILHFLH RKASLLPCYP DIIPDLGIYP QDPWQLEGKA 60 LWSENQWYYF SQVMMENQAT ENGFWKPSDI EEPIFSTSTG KKVGSKKHLV YCIGTEDAET 120 NWMMQEYHLC SSKSSGTSYK RKQKIDCNKW ILCRVYQREG SCPTSLNHGD DDGTELSCLD 180 EMFLSMDDLD DISFPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-28 | 10 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-28 | 10 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-28 | 10 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-28 | 10 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-28 | 10 | 162 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-28 | 10 | 162 | 16 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1092s0100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU286165 | 4e-81 | GU286165.1 Populus balsamifera isolate LOV02 haplotype B no apical meristem (NAM) family protein gene, partial sequence. | |||
GenBank | GU286167 | 4e-81 | GU286167.1 Populus balsamifera isolate FBK13 haplotype B no apical meristem (NAM) family protein gene, partial sequence. | |||
GenBank | GU286169 | 4e-81 | GU286169.1 Populus balsamifera isolate GAL12 haplotype B no apical meristem (NAM) family protein gene, partial sequence. | |||
GenBank | GU286171 | 4e-81 | GU286171.1 Populus balsamifera isolate INU03 haplotype B no apical meristem (NAM) family protein gene, partial sequence. | |||
GenBank | GU286173 | 4e-81 | GU286173.1 Populus balsamifera isolate RNA13 haplotype B no apical meristem (NAM) family protein gene, partial sequence. | |||
GenBank | GU286175 | 4e-81 | GU286175.1 Populus balsamifera isolate STO11 haplotype B no apical meristem (NAM) family protein gene, partial sequence. | |||
GenBank | GU286177 | 4e-81 | GU286177.1 Populus balsamifera isolate WHR03 haplotype B no apical meristem (NAM) family protein gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307034.3 | 1e-113 | NAC domain-containing protein 104 | ||||
Refseq | XP_011031172.1 | 1e-113 | PREDICTED: NAC domain-containing protein 18-like | ||||
Swissprot | Q8GWK6 | 3e-63 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2K2ACF6 | 1e-112 | A0A2K2ACF6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s06510.1 | 1e-112 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-58 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1092s0100.1.p |
Publications ? help Back to Top | |||
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