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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1078s0010.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 249aa MW: 28810.2 Da PI: 5.3088 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.4 | 1.6e-25 | 75 | 166 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r + k ++ ++r++tr gC+a+l++ ++ gkw+++ + +eHn SapurV1A.1078s0010.2.p 75 EFYELYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRGGKCPKrENGVFQSRPVTREGCNAMLRIAAKDGGKWVIYGFIKEHN 161 6***************************************987655524666789******************************** PP FAR1 87 Helap 91 H+l+p SapurV1A.1078s0010.2.p 162 HDLNP 166 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-22 | 75 | 166 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MMASTSGEQF NSNRNYRCWL AETFDDQETA DDELADNLDG NDNIIEQSIQ DFPVGLQPFE 60 PYIGMEFESA EYAREFYELY GRRMGFTIRN NRTRRSLKDN SIIGREFVCS KEGFRGGKCP 120 KRENGVFQSR PVTREGCNAM LRIAAKDGGK WVIYGFIKEH NHDLNPSKIP PRRSHRIAFS 180 EDEKDLKIRE LSTELHREKK KSAAYHKQLQ MVLTYIEEHT QRLSLKAEVV ADKVKELESE 240 EPEDPDCE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1078s0010.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380293.1 | 1e-175 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_024460694.1 | 1e-175 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | U5G3X1 | 1e-174 | U5G3X1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01930.1 | 1e-175 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-47 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1078s0010.2.p |