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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1077s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 458aa MW: 50614.2 Da PI: 7.5384 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++++G g+W+++++ g+ R++k+c++rw +yl SapurV1A.1077s0040.1.p 14 KGLWSPEEDEKLLGHITRYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 41.1 | 4.2e-13 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++ E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ SapurV1A.1077s0040.1.p 67 RGTFSQLEENLIIELHEVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.081 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.69E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.64E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.626 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-12 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.74E-8 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLGHIT RYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQLEENLIIE LHEVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPVTHKPLS EVEDGEDKNP DASRNQDKAS AVSNSELNLL KADHSEPLGA NLREKRSSSI 180 SPRGNQLERE STSSFHAMNG NGGNNLMAPT SNRDLFLDRF TAFPHEGSTS SCQPSGFGGH 240 FPLQQLNYAS NARLATNSAP SIWLSQTSKS LGMNCEFSST VIPSIPPPAV TSSFLSSSMG 300 YKPSITAPPD NPSLPSFATT SYRLWETGAP SNNSNSSTGS SGRTELQNSS SLFENAIFSW 360 GLGDCSSTEK EAQNHLIGSQ PEDIKWHEYL QNPLLMAAAL QNQNQQSLYS EIKTETHLLT 420 GNSSGMWPHN QQEQEPSQNP DICPKDMQRI TASYGYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1077s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302702.1 | 0.0 | transcription factor MYB61 | ||||
TrEMBL | B9GRW7 | 0.0 | B9GRW7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s18700.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1083 | 33 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 2e-95 | myb domain protein 61 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1077s0040.1.p |