PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1070s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 301aa    MW: 33731.7 Da    PI: 5.0283
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1070s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.6e-36301212102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y+i++d+++++++sw+e+g+sf+v+d++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF++
  SapurV1A.1070s0140.1.p  30 FLTKTYHIVDDHTIDDVVSWNEDGSSFIVWDPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVIPDR---------WEFSNESFRR 107
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+k+ll++i+r+k 
  SapurV1A.1070s0140.1.p 108 GEKHLLNNIQRRKI 121
                             ***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-5726119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-3527119IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-193053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3230119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAPPPLVEQN SLDTPTTGGG ETSRTVPTPF LTKTYHIVDD HTIDDVVSWN EDGSSFIVWD  60
PTVFARDLLP KYFKHNNFSS FVRQLNTYGF RKVIPDRWEF SNESFRRGEK HLLNNIQRRK  120
ITTVMTTPVA VVPAMMKVIK TSSNSSSDEQ VISRSSSPGL SVDLMDENER LRKENVQLRG  180
ELTEMKSLCA NIFSLVSNYA NLREGKDVKK MLDLLPKKEE EHEGARIFGV EVGVKRGREG  240
SGDREGEGED GMQLQLRQPG CGGGLKFETN GCQDGNSDGD GDQDAPWLEQ CHRLNQEMFD  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2671197129Heat shock factor protein 1
5d5v_B2e-2671197129Heat shock factor protein 1
5d5v_D2e-2671197129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1070s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140050.0KP014005.1 Populus simonii heat shock transcription factor B2a1 (HsfB2a1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438410.10.0heat stress transcription factor B-2a
SwissprotQ9SCW45e-83HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0N7DMG20.0A0A0N7DMG2_9ROSI; Heat shock transcription factor B2a1
STRINGPOPTR_0012s13430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-68heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]