PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SapurV1A.1059s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 306aa MW: 33664.8 Da PI: 9.2833

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1059s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	120	142	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H SapurV1A.1059s0050.1.p 120 YQCKTCDRRFPSFQALGGHRASH 142 9***********99999998887 PP
2	zf-C2H2	13	0.00031	203	225	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs+ L H+r+H SapurV1A.1059s0050.1.p 203 HECSVCGAEFSSGQALGGHMRRH 225 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.8E-12	119	145	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.843	120	147	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.04	120	142	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.06E-8	120	142	No hit	No description
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.06E-8	198	225	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.0E-4	201	225	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	3.8E-13	202	227	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.764	203	225	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	203	225	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	205	225	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MIMDSQDQTM GSKELAHIIK GKRTKRPRSS LPLTLAIITS SSSYSAGESG GERDRRIYNN 60 STSSSPSPST SFEFTERTGE EEDMANCLIL LARGNETCKL AKPVATAATA VNREAGLYAY 120 QCKTCDRRFP SFQALGGHRA SHRKQKPGNL DHENKKVLTM VRLAREEENG NRSNISTSTT 180 LSLQVVNERV LWNPNYVKSN KVHECSVCGA EFSSGQALGG HMRRHRAFAS TSTTTRTTTA 240 ATMSLGRISS PDRESQESKK PRNSLQLDLN LPAPEDDHLV EPKFHFASKE QVLVFTASPL 300 VDCHF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1059s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018810.1	1e-153	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	B9IFU2	1e-112	B9IFU2_POPTR; Uncharacterized protein
STRING	POPTR_0016s10790.1	1e-113	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	6e-46	C2H2 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1059s0050.1.p