PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1016s0050.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 564aa    MW: 61732.9 Da    PI: 5.8901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1016s0050.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16469515455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  SapurV1A.1016s0050.4.p 469 VHNLSERRRRDRINDKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 515
                             6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-20462524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-20462520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.311465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.27E-17468519No hitNo description
PfamPF000103.3E-14469515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MPLSELLYLM AKGKIDSSQE KDPGCSADLS FVPENDFGEL IWENGQIQSS RSRKIQPCCS  60
LPCQNPNIRY KDIGNGTNIR TGKFGMMEST LNELPMSVPA VEMGVNQDDD MVPWLNYPLD  120
ESPHHDYCSE FFPELSGVTV NEHSSQSNFP SFGKKGFSHS VRDSCTVSVH NGLSLEQLDV  180
AMNSSAGDIE ANRPRTSASQ LYPSSSEHCQ TSFPYFRSRV SAKNGDSSSI AANHVVSVDS  240
SRSPTSSGCF PSIKMQKQVP AKSTTKSGLM NFSHFARPAA LVKANLQNFG MRASAGISNL  300
ERTQNEDKGS IASSSNPAEC TPINSCSVLL KETSSHCLLV LMPSKVEAKP SEAKPAEGLV  360
PSELPENTIP EGDSNNDRNC RQNACKIAIK VVADVEKTTE PVVASSSVGS GNSLERLSDE  420
PAENLKRKHR DTEESEGPSE DVEEESVGAK KTAPARAGNG SKRSRAAEVH NLSERRRRDR  480
INDKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQV NSVHCTRSSF STLDELSNHT  540
AWWDHSLPLC RLCQWELECI CHQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473478ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1016s0050.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457375.10.0transcription factor PIF3 isoform X2
TrEMBLA0A2K2A9N80.0A0A2K2A9N8_POPTR; Uncharacterized protein
TrEMBLU5G9H30.0U5G9H3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s00360.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-51phytochrome interacting factor 3