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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1016s0050.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 737aa MW: 79659 Da PI: 6.4167 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.8 | 1.4e-16 | 469 | 515 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq SapurV1A.1016s0050.2.p 469 VHNLSERRRRDRINDKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 515 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.12E-17 | 461 | 519 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-20 | 462 | 523 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-20 | 462 | 527 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.311 | 465 | 514 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-14 | 469 | 515 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-17 | 471 | 520 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MPLSELLYLM AKGKIDSSQE KDPGCSADLS FVPENDFGEL IWENGQIQSS RSRKIQPCCS 60 LPCQNPNIRY KDIGNGTNIR TGKFGMMEST LNELPMSVPA VEMGVNQDDD MVPWLNYPLD 120 ESPHHDYCSE FFPELSGVTV NEHSSQSNFP SFGKKGFSHS VRDSCTVSVH NGLSLEQLDV 180 AMNSSAGDIE ANRPRTSASQ LYPSSSEHCQ TSFPYFRSRV SAKNGDSSSI AANHVVSVDS 240 SRSPTSSGCF PSIKMQKQVP AKSTTKSGLM NFSHFARPAA LVKANLQNFG MRASAGISNL 300 ERTQNEDKGS IASSSNPAEC TPINSCSVLL KETSSHCLLV LMPSKVEAKP SEAKPAEGLV 360 PSELPENTIP EGDSNNDRNC RQNACKIAIK VVADVEKTTE PVVASSSVGS GNSLERLSDE 420 PAENLKRKHR DTEESEGPSE DVEEESVGAK KTAPARAGNG SKRSRAAEVH NLSERRRRDR 480 INDKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGMYMP SMMLAPGMPH 540 MHAAQMGQFF PMGVGMGMRM GMGMGFGMSM PDMNGGSPGC PVYQAPPMHG AHFSAQPMSG 600 PSALHGMGGS SLPMFGFPAQ GFPFSFPRAP LVPMSGGPPL KTNTEPDACG VVGAMDNLDS 660 AVARELNHTS IQNINSQVMQ NNVVISSMNQ TSSQTEFSGS RCTLIPSQCC MMLNCKYDLH 720 IRTKLLNFDL QGQFRL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 473 | 478 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1016s0050.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457375.1 | 0.0 | transcription factor PIF3 isoform X2 | ||||
TrEMBL | U5G9H3 | 0.0 | U5G9H3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s00360.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-59 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1016s0050.2.p |