PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1016s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 442aa    MW: 49081.7 Da    PI: 7.2879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1016s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W++eEde+l+++++++G g+W+++++   + R++k+c++rw +yl
  SapurV1A.1016s0030.1.p 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLADLQRCGKSCRLRWINYL 61
                            678*******************************************97 PP
2Myb_DNA-binding452.6e-1467110146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+++++E+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  SapurV1A.1016s0030.1.p  67 RGAFSQQEENLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                             89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.758965IPR017930Myb domain
SuperFamilySSF466898.07E-2912108IPR009057Homeodomain-like
SMARTSM007172.2E-121363IPR001005SANT/Myb domain
PfamPF002493.5E-151461IPR001005SANT/Myb domain
CDDcd001672.70E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.96166116IPR017930Myb domain
SMARTSM007174.9E-1266114IPR001005SANT/Myb domain
PfamPF002496.2E-1367110IPR001005SANT/Myb domain
CDDcd001677.31E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLADLQRCG KSCRLRWINY  60
LRPDLKRGAF SQQEENLIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPLS EVENCTEKQQ PTADTSNEKV SIVSNELNLI EAAATLKPPA ISSSSKINTS  180
IDSNKDRNSS GSNMKNTPPT QEFFLDRFGT SHESSPASCR PSDLMGYFPF QKLDYKRAIG  240
LSMNPNTTLC FNPNSSSSEM ISHEFNSSMT PPPIHPSVST PMFQTPIRVK PSVSLPSDHN  300
PSVASCDVNG VQNWEASSFS NGSSSSIELQ SNTNFYESSA FSWGLADCGK SGEEAHLRSL  360
GNDTAEDIKW SEYLNTTFFL GSTIQNQTSQ HVYSEVKPES YFIAEGSSAS WIPNQHQQAS  420
QPADIYTKDL QRLAVAFGQS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1016s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8017490.0JQ801749.1 Populus tomentosa putative transcription factor (MYB216) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039057.10.0PREDICTED: transcription factor MYB86-like
SwissprotQ8VZQ21e-130MYB61_ARATH; Transcription factor MYB61
TrEMBLB9N4050.0B9N405_POPTR; MYB family protein
STRINGPOPTR_0005s00340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108333103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-132myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]