PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1012s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 672aa    MW: 73764 Da    PI: 7.2379
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1012s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.96.3e-1092966712374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             +++++e+A a+ +g++    ++L+r+ + a+p+g++ qRl  y++ AL++r++      +++ +++e     s++++ a++ ++e+s
  SapurV1A.1012s0040.1.p 296 KQTIIEAASAIYEGKTDVYPEILTRICQVANPRGNSEQRLMEYMLMALKSRVNY-----AEKTTVRELY---SKKHVDATQSLYELS 374
                             57899************************************************9.....3333444444...88999999******* PP

                    GRAS  89 PilkfshltaNqaIleavege.....erv....HiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleetge 163
                             P++k+++++aN aI ea+ ++     +      H++Dfdi+qG+Q+++Ll+aL+  ++ +p+ ++iT+v++ ++g  ++e+l+ +ge
  SapurV1A.1012s0040.1.p 375 PCFKLGFMAANFAIIEATREQghemnR-CsngfHVVDFDIGQGGQYVNLLHALSgPQNLKPAIVKITAVAADSNGgeEEERLRLVGE 460
                             ******************998865541.25566*********************54557777*********9999999********* PP

                    GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                             +L+++A++lg+++ fnv v+  l++l+ e+Lr++p+EalaVn++++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+++n+
  SapurV1A.1012s0040.1.p 461 KLRQLAQRLGLSLCFNV-VSCGLSELSRESLRCEPEEALAVNFAFKLYRMPDESVSTENPRDELLRRVKGLAPRVVTIVEQELNTNT 546
                             ****************9.7999***************************************************************** PP

                    GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                             ++F++r+ e+++yy alfds+++++ res+er+kvE+  lgr i n vaceg++r+er+e ++kWr+r+++aGF+p p+s+++a+++
  SapurV1A.1012s0040.1.p 547 APFMARVNESCSYYGALFDSIDSTVERESSERVKVEEG-LGRTIINSVACEGRDRIERCEVFGKWRARMGMAGFEPKPMSHNVAESM 632
                             **************************************.************************************************ PP

                    GRAS 338 klllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             k+ l+ ++  + g++v+e+ g +++gWk+++L+++SaWr
  SapurV1A.1012s0040.1.p 633 KARLSLTNrvNPGFTVKEQAGGVCFGWKGKTLTVASAWR 671
                             **99999887889*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.673269649IPR005202Transcription factor GRAS
PfamPF035142.2E-106296671IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MASGFPSGGG GGGGGGRGGG GGFQDLYTNR SSLPNMNFSN NPSSLPPYRT SQIFLDQNLS  60
SHNYQQIAQH RAIFPTNMNA AAAATPTLIG KRTLADFQSP PQQNLLNQAA LNNLLLRSVK  120
PRVNNNLFQQ NTSPISTHTP IDFSVNNLSP QLPNLMPQRY GLPLLQQLRS QQQQHPMNLM  180
NSNGAVIINN NNSNNNNMMP YVNMLQNQNG GGNGVVLGHD KEKKMLNQLQ ELEKQLLEDD  240
DDNQEGEDVS GITNSNSQWS EAIQSFMGSS FNNPISPSPT SSSSSSSSTV TTPVSKQTII  300
EAASAIYEGK TDVYPEILTR ICQVANPRGN SEQRLMEYML MALKSRVNYA EKTTVRELYS  360
KKHVDATQSL YELSPCFKLG FMAANFAIIE ATREQGHEMN RCSNGFHVVD FDIGQGGQYV  420
NLLHALSGPQ NLKPAIVKIT AVAADSNGGE EEERLRLVGE KLRQLAQRLG LSLCFNVVSC  480
GLSELSRESL RCEPEEALAV NFAFKLYRMP DESVSTENPR DELLRRVKGL APRVVTIVEQ  540
ELNTNTAPFM ARVNESCSYY GALFDSIDST VERESSERVK VEEGLGRTII NSVACEGRDR  600
IERCEVFGKW RARMGMAGFE PKPMSHNVAE SMKARLSLTN RVNPGFTVKE QAGGVCFGWK  660
GKTLTVASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3931867126375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11421GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1012s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038364.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-173SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2K2ARG50.0A0A2K2ARG5_POPTR; GRAS family protein
STRINGPOPTR_0017s01730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-140SCARECROW-like 8