PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1002s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 309aa    MW: 34715.1 Da    PI: 4.5484
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1002s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-1986139356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k++++t +q++ Le+ Fe ++++  e++++LAk lgL+ rq+ +WFqNrRa++k
  SapurV1A.1002s0030.1.p  86 KKRRLTVDQVQFLEKSFELENKLEPERKTQLAKDLGLQPRQIAIWFQNRRARWK 139
                             56689************************************************9 PP
2HD-ZIP_I/II131.63.1e-4285176192
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrl+ +qv++LE+sFe e+kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L+ke+e+L
  SapurV1A.1002s0030.1.p  85 EKKRRLTVDQVQFLEKSFELENKLEPERKTQLAKDLGLQPRQIAIWFQNRRARWKTKQLEKDYDVLQSSYNSLKADYDSLHKENEKL 171
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelk 92 
                             ++e++
  SapurV1A.1002s0030.1.p 172 KAEVN 176
                             *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-1971143IPR009057Homeodomain-like
PROSITE profilePS5007117.4181141IPR001356Homeobox domain
SMARTSM003896.4E-1984145IPR001356Homeobox domain
CDDcd000863.91E-1886142No hitNo description
PfamPF000462.0E-1686139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-2088149IPR009057Homeodomain-like
PRINTSPR000319.1E-6112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000319.1E-6121137IPR000047Helix-turn-helix motif
PfamPF021831.6E-17141182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAGSTGGSNS NLSVLLQSQR VPCAASQPLE SFFLPGSSPS FLGSRSMMSF EDVHQSTGST  60
RSFFRAFDHE DNGDDDLDEY FHQPEKKRRL TVDQVQFLEK SFELENKLEP ERKTQLAKDL  120
GLQPRQIAIW FQNRRARWKT KQLEKDYDVL QSSYNSLKAD YDSLHKENEK LKAEVNLLTD  180
KVLLKEKGSS ELSDKDALSQ EPPKKAVLAA DSASEGEVSK ISAVACSKQD DISSAKSDIF  240
DSDSPHYAAD GVHSSYVFEP DQSDLSQDEE DNFSKSLLPP YVFPKLEDGD YSDPHASFED  300
HAFWSWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1002s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1478220.0EF147822.1 Populus trichocarpa clone WS0125_E07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321530.20.0homeobox-leucine zipper protein HAT5
TrEMBLA9PHH00.0A9PHH0_POPTR; HD-ZIP family protein
STRINGPOPTR_0015s07640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-51homeobox 1