PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0977s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 339aa    MW: 37557.9 Da    PI: 5.5447
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0977s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.54.6e-22191591128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeek...ewyfFskrdkkyat..gkrkn 75 
                             +p G rF+P+deelv +yL kk ++++l++  ++ e+d+y  eP+++ k       k  ++ +    ++fF++ +kk     ++r  
  SapurV1A.0977s0080.1.p  19 MPSGWRFNPSDEELVIHYLSKKSKNEPLPCPYAVLECDLYGREPNEIWKefggdrlK--GKIDldvGLFFFTRLKKKGGAhgSSRID 103
                             699***************************889**************7546676442..3222334679999988887642256777 PP

                     NAM  76 ra..tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             r+   ++g+W++    ++++++ +++ +g k+ +++ ++r+++  + +W m e +l
  SapurV1A.0977s0080.1.p 104 RSvgNNDGTWHEDRALRRIVCTeTKKIIGSKRRFTYKSNRSQNRGRVRWHMFEISL 159
                             8523459********999998757778**************9999******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-2415174IPR003441NAC domain
PROSITE profilePS5100528.00519174IPR003441NAC domain
PfamPF023653.0E-1420158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MQDWDDHPAR RCGPAQLEMP SGWRFNPSDE ELVIHYLSKK SKNEPLPCPY AVLECDLYGR  60
EPNEIWKEFG GDRLKGKIDL DVGLFFFTRL KKKGGAHGSS RIDRSVGNND GTWHEDRALR  120
RIVCTETKKI IGSKRRFTYK SNRSQNRGRV RWHMFEISLP GNSSDHVVCQ LKRKERKSVE  180
SGRGDAGVEN ENGQGAPERQ RTVSRTDQAG PSFFNSDRTL ESNEAKRNGS GCGKEMVAIN  240
SIESGRGDAG VENDDDEGVE KRQRTDSWTN QEAGPSFFNS NKTPESYEGK RDSTGSGEET  300
GASIGGGGGG GHSFDLNIEW TNPDEDDTSD SDAKDSAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0977s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840740.0AC184074.2 Populus trichocarpa clone Pop1-51H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464534.11e-179NAC domain-containing protein 83
TrEMBLA0A3N7FCU81e-178A0A3N7FCU8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22770.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-12NAC domain containing protein 52